View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11783_high_4 (Length: 246)
Name: NF11783_high_4
Description: NF11783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11783_high_4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 42944205 - 42944433
Alignment:
| Q |
17 |
atcagaaagcacctgtagcaagccttgcttgattgacaagagacaatagtactgtgaaagaataaagggttccaaagttttagctgtattgatggtgtca |
116 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42944205 |
atcagaaagcacctgtagtaagccttgcttgattgacaagagacaatagtactgtgaaagaataaagggtt-caaagttttagctgtattgatggtgtca |
42944303 |
T |
|
| Q |
117 |
ccacgacaaaatagtcctcaatttgattcctgaaattgannnnnnnnagaccgaggacaaactttaaactttttgaagcatacaattaacaacttatttt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42944304 |
ccacgacaaaatagtcctcaatttgattcctgaaattgattttttttcgaccgaggacaaactttaaactttttgaagcatacaattaacaacttaattt |
42944403 |
T |
|
| Q |
217 |
tgttctaaaacataattgagttaatttcag |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
42944404 |
tgttctaaaacataattgagttaatttcag |
42944433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University