View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11784_high_13 (Length: 438)
Name: NF11784_high_13
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 12 - 421
Target Start/End: Original strand, 48325759 - 48326170
Alignment:
| Q |
12 |
caaaggtgatggcaaagatgggatttgttgaaggttcaggattaggtagagaatcgcaaggtattactgctccattgggcgctgttcggttaccaaagtc |
111 |
Q |
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| T |
48325759 |
caaagatgatggcaaagatgggatttgttgaaggttcaggattaggtagagaatcgcaaggtattactgctccattgggcgctgttcggttaccaaagtc |
48325858 |
T |
|
| Q |
112 |
acgaggactgggcgccaaaggttaatttagatgtaacgtgtttatgttcctttctaattgtgtattgttgtcttgt-tgttgtgatcttacgtggtaatt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
48325859 |
acgaggactgggcgccaaaggttaatttagatgtaacgtgtttatgttcctttctaattgtgtattgttgttttaagtgttgtgatcttacgtggtaatt |
48325958 |
T |
|
| Q |
211 |
tatcgttaccgtagaaagactgtctaaaa-atcaatgttaaagttatctaggtttcttgcttgtagttttttaattatggaaacaaaataagaaaactcg |
309 |
Q |
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| T |
48325959 |
tatcgttaccgtagaaagactgtctaaaaaatcaatgttaaagttatctaggtttcttgcttgtagttttttaattatggaaacaaaataagaaaactcg |
48326058 |
T |
|
| Q |
310 |
gtcctacctctatggaggacatgtagtttatgtataagatacctgctacattgaatctgtgaccattggatgaactcgtggagttttatgtttctgtatg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48326059 |
gtcctacctctatggaggacatgtagtttatgtataagatacctgctacattgaatctgtgaccattggatgaactcgtggagttttatgtttctgtatg |
48326158 |
T |
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| Q |
410 |
atactgaagctg |
421 |
Q |
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|||||||||||| |
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| T |
48326159 |
atactgaagctg |
48326170 |
T |
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