View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11784_high_16 (Length: 380)
Name: NF11784_high_16
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 19896263 - 19895912
Alignment:
| Q |
11 |
tgagaagtgagttaaaggtgatgtgtttgatagacatttgcaatacaattacaaagtgcatatgatttagaagagcctaggtacggatgttaaccgtttt |
110 |
Q |
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| T |
19896263 |
tgagaagtgagttaaaggtgatgtgtttgatagacatttgcaatacaattacaaagtgcatatgatttagaagagcctaggtacggatgttaaccgtttt |
19896164 |
T |
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| Q |
111 |
aaggggtgaaaaggtaacttagaaacactcacttatcctgactnnnnnnnnnnnnnnnnnnnncatatgtccatccattagcttaattagctactcggtc |
210 |
Q |
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| T |
19896163 |
aaggggtgaaaaggtcacttagaaacactcacttatcctgactgagaggagagtgagagagagcatatgtccatccattagcttaattagctactcggtc |
19896064 |
T |
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| Q |
211 |
ttggaaaggtcagttcaaatgtatgcatcactaccttcacatgtgtttcttgacttgtcaaatcaataaacaccatcacactcttgtataaagttattta |
310 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19896063 |
ttggaaaggtcagttcaaatgtatgcatcacaaccttcacatgtgtttcttgacttgtcaaatcaataaacaccatcactctcttgtataaagttattta |
19895964 |
T |
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| Q |
311 |
ttgcgtttttaaatacatattacaatcaacaactttagacataccaatatac |
362 |
Q |
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| T |
19895963 |
ttgtgtttttaaatatatattgcaatcaacaactttagacatactaatatac |
19895912 |
T |
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