View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11784_high_17 (Length: 365)
Name: NF11784_high_17
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 35 - 346
Target Start/End: Original strand, 10671504 - 10671830
Alignment:
| Q |
35 |
ctaaattaggaaacaaatttacctcatggtctttatcttgaa-------------ctctcatataatgcttcaaaatctgccaaaagaaagaaagaaacn |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10671504 |
ctaaattaggaaacaaatttacctcatggtctttatcttgaatacaaatcttgaactctcatataatgcttcaaaatctgccaaaagaaagaaagaaaaa |
10671603 |
T |
|
| Q |
122 |
nnnnnnnnnn------ggattagaccacaaaaagcaatataaccaacctttcatggaaaaatttcttagtgataaatcatctaatttctaatcaaaaaga |
215 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10671604 |
aaaaaaaaaaaaaaaaggattagaccacaaaaagcaataaaacc----tttcatggaaaaatttcttagtgataaatcatctaatttctaataaaaaaga |
10671699 |
T |
|
| Q |
216 |
tataaaagatgatcttcagcaatcaacaataaacgaacaacaacatatcactacattatgcaagtaataagtgatgagaccatttggttctattgtgaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10671700 |
tataaaagatgatcttcagcaatcaacaataaacaaacaacaacatatcactacattatgcaaataataagtgatgagaccatttggttctattgtgaaa |
10671799 |
T |
|
| Q |
316 |
atgttagaaacaatgattttcacctcaccaa |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10671800 |
atgttagaaacaatgattttcacctcaccaa |
10671830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 45048850 - 45048804
Alignment:
| Q |
69 |
atcttgaactctcatataatgcttcaaaatctgccaaaagaaagaaa |
115 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
45048850 |
atcttgatctctcataaaatgcttcaaaatctgccaaaacaaagaaa |
45048804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University