View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11784_high_19 (Length: 350)
Name: NF11784_high_19
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 52557579 - 52557277
Alignment:
| Q |
1 |
ttgtaggagatatacaa-ccttcagttcacccacagtcacagacacagagaatacataaatatatcatttaatttgtgttagtttgtttggagaaaaaga |
99 |
Q |
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| T |
52557579 |
ttgtaggagatatacaaaccttcagttcacccacagtcacagacacaaagaatacataaatatatcatttaatttgtgttagtttgtttggtgaaaaaga |
52557480 |
T |
|
| Q |
100 |
agataagaaagtaagaaacctggtggttccatcaaataaggaaggtggaggtgaagtggaagtaaggggtggtggaagaacttgttgctcacttcagttc |
199 |
Q |
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| T |
52557479 |
agataagaaagtaagaaacctggtagttccatcaaataaggaaggtggaggtgaagtggaagtaaggggtggtggaagaacttgttgcacacttcagttc |
52557380 |
T |
|
| Q |
200 |
acaatataaaaacaagtttagttagaaagaagcataattagttaactgagctcagcttagcctcagcaggcaagcagacatacccggttgatatggctaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52557379 |
acaatataaaaacaagtttagttagaaagaagcataattagttaactgagctcagcttagcctcagcaggcaagcagacatacccggttgatatggctaa |
52557280 |
T |
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| Q |
300 |
tgt |
302 |
Q |
| |
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||| |
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| T |
52557279 |
tgt |
52557277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 52557252 - 52557217
Alignment:
| Q |
300 |
tgtaacagaattaaaccgctgccggaggtgaagctt |
335 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
52557252 |
tgtaacagaattaaaccgctgccggaggtgaagctt |
52557217 |
T |
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