View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11784_high_24 (Length: 309)

Name: NF11784_high_24
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11784_high_24
NF11784_high_24
[»] chr4 (1 HSPs)
chr4 (1-293)||(42089856-42090142)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 42089856 - 42090142
Alignment:
Q  1 atgcaagatgaaaacagtaaagtgaaagaaatacataccctctggagtggacatggcgaaaactgagaaatttcttcttgttcgaacaagttggggagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42089856 atgcaagatgaaaacagtaaagtgaaagaaatacataccatctggagtggacatggcgaaaactgagaaatttcttcttgttcgaacaagttggggagaa 42089955  T
Q  101 gtgggtttaattggagaagttccaaagaattgtgataatgaagatgaagaggaatggaaagaacgggattgtactgggcgaaaacatgtgcccatgaaac 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||    
T  42089956 gtgggtttaattggagaagttcgaaagaattgtgataatgaagatgaaga------gaaagaacgggattgtactgggcgaaaacatgtgcccatgaaac 42090049  T
Q  201 gaagtggagaaagaagggtaggttttcggtgagagccattaagactacagagagaagaagttgccacttgaaatgattctgcagccatagttt 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42090050 gaagtggagaaagaagggtaggttttcggtgagagccattaagactacagagagaagaagttgccacttgaaatgattctgctgccatagttt 42090142  T

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