View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11784_high_32 (Length: 229)

Name: NF11784_high_32
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11784_high_32
NF11784_high_32
[»] chr5 (6 HSPs)
chr5 (161-229)||(27756531-27756599)
chr5 (19-82)||(16309702-16309765)
chr5 (19-82)||(27756389-27756452)
chr5 (168-229)||(16309852-16309913)
chr5 (23-76)||(16308957-16309010)
chr5 (23-76)||(27755650-27755703)
[»] chr4 (5 HSPs)
chr4 (161-229)||(42889557-42889625)
chr4 (19-82)||(42889415-42889478)
chr4 (19-82)||(54535342-54535405)
chr4 (23-82)||(42888673-42888732)
chr4 (32-76)||(36887327-36887371)
[»] chr2 (10 HSPs)
chr2 (161-229)||(44464836-44464904)
chr2 (19-82)||(44464694-44464757)
chr2 (19-78)||(8802914-8802973)
chr2 (19-78)||(44420191-44420250)
chr2 (23-77)||(34592082-34592136)
chr2 (30-74)||(8802202-8802246)
chr2 (28-76)||(37394277-37394325)
chr2 (23-82)||(44463953-44464012)
chr2 (164-226)||(44420043-44420105)
chr2 (163-204)||(44421090-44421131)
[»] chr1 (7 HSPs)
chr1 (161-229)||(7185602-7185670)
chr1 (19-82)||(7185460-7185523)
chr1 (24-82)||(23080360-23080418)
chr1 (19-78)||(13210727-13210786)
chr1 (23-76)||(7184713-7184766)
chr1 (27-76)||(26646455-26646504)
chr1 (163-207)||(13209842-13209886)
[»] chr8 (3 HSPs)
chr8 (19-82)||(5462310-5462373)
chr8 (161-225)||(3157785-3157849)
chr8 (161-211)||(5462181-5462231)
[»] chr3 (3 HSPs)
chr3 (19-82)||(30700729-30700792)
chr3 (163-229)||(30700541-30700607)
chr3 (23-82)||(30701449-30701508)


Alignment Details
Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 27756531 - 27756599
Alignment:
Q  161 atcaaagtttttaatttaaagttttgctaagtagtgtttttgaatttcatccctatgtaagttttcgtt 229  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  27756531 atcaaagtttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtt 27756599  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 16309702 - 16309765
Alignment:
Q  19 aagaggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttctgggt 82  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  16309702 aagaggaaatggaaaatgagattttgattaaagaatttgaatatttaatttatgttttctgggt 16309765  T

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Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 27756389 - 27756452
Alignment:
Q  19 aagaggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttctgggt 82  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  27756389 aagaggaaatggaaaatgagattttgattaaagaatttgaatgtttaatttatgttttatgggt 27756452  T

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Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 229
Target Start/End: Original strand, 16309852 - 16309913
Alignment:
Q  168 tttttaatttaaagttttgctaagtagtgtttttgaatttcatccctatgtaagttttcgtt 229  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  16309852 tttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtt 16309913  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 16309010 - 16308957
Alignment:
Q  23 ggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgtttt 76  Q
    |||||| |||||| |||||||||| ||||| ||||||||| |||||||||||||    
T  16309010 ggaaatagaaaataagattttgattaaagagtttgaatgtataatttatgtttt 16308957  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 27755703 - 27755650
Alignment:
Q  23 ggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgtttt 76  Q
    |||||| |||||| |||||||||| ||||| ||||||||| |||||||||||||    
T  27755703 ggaaatagaaaataagattttgattaaagagtttgaatgtataatttatgtttt 27755650  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 42889557 - 42889625
Alignment:
Q  161 atcaaagtttttaatttaaagttttgctaagtagtgtttttgaatttcatccctatgtaagttttcgtt 229  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  42889557 atcaaagtttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtt 42889625  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 42889415 - 42889478
Alignment:
Q  19 aagaggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttctgggt 82  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42889415 aagaggaaatggaaaatgagattttgattaaagaatttgaatgtttaatttatgttttctgggt 42889478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 54535405 - 54535342
Alignment:
Q  19 aagaggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttctgggt 82  Q
    ||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  54535405 aagaggaaatgaaaaatgagattttgattaaagagtttgaatgtctaatttatgttttctgggt 54535342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 42888732 - 42888673
Alignment:
Q  23 ggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttctgggt 82  Q
    |||||| |||||| |||||||||| ||||| ||||||||| ||||||||||||| |||||    
T  42888732 ggaaatagaaaataagattttgattaaagagtttgaatgtataatttatgttttatgggt 42888673  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 36887371 - 36887327
Alignment:
Q  32 aaatgagattttgatcaaagaatttgaatgtttaatttatgtttt 76  Q
    ||||||||||||||| ||||| |||||||||||||||||| ||||    
T  36887371 aaatgagattttgattaaagagtttgaatgtttaatttatatttt 36887327  T

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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 44464836 - 44464904
Alignment:
Q  161 atcaaagtttttaatttaaagttttgctaagtagtgtttttgaatttcatccctatgtaagttttcgtt 229  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  44464836 atcaaagtttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtt 44464904  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 44464694 - 44464757
Alignment:
Q  19 aagaggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttctgggt 82  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44464694 aagaggaaattgaaaatgagattttgattaaagaatttgaatgtttaatttatgttttctgggt 44464757  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 8802914 - 8802973
Alignment:
Q  19 aagaggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttct 78  Q
    ||||||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||    
T  8802914 aagaggaaatggaaaatgagattttgattgaagagtttgaatgttgaatttatgttttct 8802973  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 44420250 - 44420191
Alignment:
Q  19 aagaggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttct 78  Q
    ||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  44420250 aagaggaaatgaaaaatgagattttgattaaagagtttgaatgtctaatttatgttttct 44420191  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 34592136 - 34592082
Alignment:
Q  23 ggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttc 77  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  34592136 ggaaatagaaaatgagattttgattaaagagtttgaatgtttaatttatgttttc 34592082  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 8802246 - 8802202
Alignment:
Q  30 gaaaatgagattttgatcaaagaatttgaatgtttaatttatgtt 74  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||    
T  8802246 gaaaatgagattttgattaaagagtttgaatgtttaatttatgtt 8802202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 37394325 - 37394277
Alignment:
Q  28 tggaaaatgagattttgatcaaagaatttgaatgtttaatttatgtttt 76  Q
    ||||||||||||||||||| ||||| ||||||||| |||||||||||||    
T  37394325 tggaaaatgagattttgattaaagagtttgaatgtctaatttatgtttt 37394277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 44464012 - 44463953
Alignment:
Q  23 ggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttctgggt 82  Q
    |||||| |||||| |||||||||| ||||| ||||||||| ||||||||||||| |||||    
T  44464012 ggaaatagaaaataagattttgattaaagagtttgaatgtataatttatgttttatgggt 44463953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 226
Target Start/End: Complemental strand, 44420105 - 44420043
Alignment:
Q  164 aaagtttttaatttaaagttttgctaagtagtgtttttgaatttcatccctatgtaagttttc 226  Q
    ||||||||||||||||| ||||| |||||  |||||||||||||| ||||| ||||| |||||    
T  44420105 aaagtttttaatttaaaattttgttaagtcatgtttttgaatttcgtccctctgtaaattttc 44420043  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 44421090 - 44421131
Alignment:
Q  163 caaagtttttaatttaaagttttgctaagtagtgtttttgaa 204  Q
    |||||||||||||||||| ||||| ||||| |||||||||||    
T  44421090 caaagtttttaatttaaaattttgttaagtcgtgtttttgaa 44421131  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 161 - 229
Target Start/End: Original strand, 7185602 - 7185670
Alignment:
Q  161 atcaaagtttttaatttaaagttttgctaagtagtgtttttgaatttcatccctatgtaagttttcgtt 229  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  7185602 atcaaagtttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagttttcgtt 7185670  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 7185460 - 7185523
Alignment:
Q  19 aagaggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttctgggt 82  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7185460 aagaggaaatggaaaatgagattttgattaaagaatttgaatgtttaatttatgttttctgggt 7185523  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 23080418 - 23080360
Alignment:
Q  24 gaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttctgggt 82  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||||||| |||| |||||    
T  23080418 gaaatgggaaatgagattttgattaaagagtttgaatgtttaatttatattttttgggt 23080360  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 13210727 - 13210786
Alignment:
Q  19 aagaggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttct 78  Q
    |||||||||| |||||||||||||| || ||||| ||||||||  |||||||||||||||    
T  13210727 aagaggaaatagaaaatgagattttaattaaagagtttgaatgcctaatttatgttttct 13210786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 7184766 - 7184713
Alignment:
Q  23 ggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgtttt 76  Q
    |||||| |||||| |||||||||| ||||| ||| ||||| |||||||||||||    
T  7184766 ggaaatagaaaataagattttgattaaagagttttaatgtataatttatgtttt 7184713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 26646455 - 26646504
Alignment:
Q  27 atggaaaatgagattttgatcaaagaatttgaatgtttaatttatgtttt 76  Q
    |||| ||||| ||||||||| ||||| ||||||||||||||| |||||||    
T  26646455 atgggaaatgtgattttgattaaagagtttgaatgtttaattaatgtttt 26646504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 13209886 - 13209842
Alignment:
Q  163 caaagtttttaatttaaagttttgctaagtagtgtttttgaattt 207  Q
    |||||||||||||||||| ||||| | ||| ||||||||||||||    
T  13209886 caaagtttttaatttaaaattttgtttagtcgtgtttttgaattt 13209842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 5462373 - 5462310
Alignment:
Q  19 aagaggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttctgggt 82  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5462373 aagaggaaatggaaaatgagattttgattaaagaatttgaatgtttaatttatgttttctgggt 5462310  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 161 - 225
Target Start/End: Original strand, 3157785 - 3157849
Alignment:
Q  161 atcaaagtttttaatttaaagttttgctaagtagtgtttttgaatttcatccctatgtaagtttt 225  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  3157785 atcaaagtttttaatttaaagttttgctaagtcgtgtttttgaatttcatccctctgtaagtttt 3157849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 5462231 - 5462181
Alignment:
Q  161 atcaaagtttttaatttaaagttttgctaagtagtgtttttgaatttcatc 211  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  5462231 atcaaagtttttaatttaaagttttgctaactcgtgtttttgaatttcatc 5462181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 30700792 - 30700729
Alignment:
Q  19 aagaggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttctgggt 82  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30700792 aagaggaaatgaaaaatgagattttgattaaagaatttgaatgtttaatttatgttttctgggt 30700729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 163 - 229
Target Start/End: Complemental strand, 30700607 - 30700541
Alignment:
Q  163 caaagtttttaatttaaagttttgctaagtagtgtttttgaatttcatccctatgtaagttttcgtt 229  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||    
T  30700607 caaagtttttaatttaaagttttgctaagtcgtttttttgaatttcatccctctgtaagttttcgtt 30700541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 30701449 - 30701508
Alignment:
Q  23 ggaaatggaaaatgagattttgatcaaagaatttgaatgtttaatttatgttttctgggt 82  Q
    |||||| |||||| |||||||||| ||||| ||||||||| ||||||||||||| |||||    
T  30701449 ggaaatagaaaataagattttgattaaagagtttgaatgtataatttatgttttatgggt 30701508  T

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