View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11784_high_34 (Length: 226)

Name: NF11784_high_34
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11784_high_34
NF11784_high_34
[»] chr5 (6 HSPs)
chr5 (1-221)||(5435138-5435338)
chr5 (1-221)||(5448958-5449158)
chr5 (96-188)||(7254570-7254661)
chr5 (96-188)||(7262012-7262103)
chr5 (99-148)||(7786938-7786986)
chr5 (99-148)||(7794788-7794836)
[»] chr6 (3 HSPs)
chr6 (87-221)||(22632157-22632290)
chr6 (114-181)||(22060208-22060274)
chr6 (37-71)||(22632286-22632320)
[»] chr3 (10 HSPs)
chr3 (88-211)||(46392880-46393002)
chr3 (88-211)||(46400628-46400750)
chr3 (114-181)||(15610014-15610080)
chr3 (114-181)||(15578970-15579036)
chr3 (114-181)||(15909598-15909664)
chr3 (114-181)||(15923767-15923833)
chr3 (114-148)||(15528602-15528636)
chr3 (114-148)||(15537292-15537326)
chr3 (99-148)||(6194482-6194530)
chr3 (99-148)||(6202065-6202113)
[»] chr2 (6 HSPs)
chr2 (93-211)||(39650095-39650213)
chr2 (114-181)||(44370764-44370830)
chr2 (96-148)||(22934751-22934802)
chr2 (96-148)||(22954609-22954660)
chr2 (92-127)||(21065200-21065235)
chr2 (96-148)||(22940714-22940765)
[»] chr8 (4 HSPs)
chr8 (111-181)||(15449791-15449860)
chr8 (96-148)||(39631035-39631086)
chr8 (96-148)||(39640583-39640634)
chr8 (87-127)||(6031349-6031389)
[»] scaffold0182 (1 HSPs)
scaffold0182 (93-181)||(5733-5821)
[»] chr1 (3 HSPs)
chr1 (93-140)||(20979514-20979560)
chr1 (91-127)||(6197399-6197435)
chr1 (91-127)||(6205250-6205286)
[»] scaffold0076 (1 HSPs)
scaffold0076 (97-181)||(60810-60896)
[»] scaffold0075 (1 HSPs)
scaffold0075 (87-127)||(56569-56609)
[»] chr4 (1 HSPs)
chr4 (87-127)||(16871-16911)
[»] scaffold0431 (1 HSPs)
scaffold0431 (93-148)||(2269-2323)
[»] chr7 (2 HSPs)
chr7 (114-148)||(42017373-42017407)
chr7 (92-148)||(5651050-5651106)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5435138 - 5435338
Alignment:
Q  1 tctctggctttctctgtgtgttgctcttgcttctgcgtttttccgtgttctgctgtgtgattcagtgtgttctgctgtgcgatgccgtgtcgttcttgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |           | ||        |||| |||||||||    
T  5435138 tctctggctttctctgtgtgttgctcttgcttctgcgtttttccgtgttctgctgtgtgatcc-----------ccgt--------gtgttgttcttgtg 5435218  T
Q  101 ttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggatttggatgaaaga 200  Q
    |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5435219 ttgtgcagggctctatttatagag-tgaggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggatttggatgaaaga 5435317  T
Q  201 tggagacgcgtctgtgctcct 221  Q
    ||||||||||| |||| ||||    
T  5435318 tggagacgcgtttgtgttcct 5435338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5448958 - 5449158
Alignment:
Q  1 tctctggctttctctgtgtgttgctcttgcttctgcgtttttccgtgttctgctgtgtgattcagtgtgttctgctgtgcgatgccgtgtcgttcttgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |           | |||        ||| |||||||||    
T  5448958 tctctggctttctctgtgtgttgctcttgcttctgcgtttttccgtgttctactgtgtgatcc-----------ccgtg--------tgttgttcttgtg 5449038  T
Q  101 ttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggatttggatgaaaga 200  Q
    |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5449039 ttgtgcagggctctatttatagag-tgaggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggatttggatgaaaga 5449137  T
Q  201 tggagacgcgtctgtgctcct 221  Q
    ||||||||||| |||| ||||    
T  5449138 tggagacgcgtttgtgttcct 5449158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 7254570 - 7254661
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggat 188  Q
    |||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7254570 ttgtgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggat 7254661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 7262012 - 7262103
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggat 188  Q
    |||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7262012 ttgtgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggat 7262103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 7786986 - 7786938
Alignment:
Q  99 tgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    ||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  7786986 tgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtt 7786938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 7794836 - 7794788
Alignment:
Q  99 tgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    ||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  7794836 tgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtt 7794788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 22632290 - 22632157
Alignment:
Q  87 gtgtcgttcttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcgg 186  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22632290 gtgttgttcttgtgttgtgcagggctctatttatagtgctggg-ttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcgg 22632192  T
Q  187 atttggatgaaagatggagacgcgtctgtgctcct 221  Q
    ||||||||||||||||||||||||| |||| ||||    
T  22632191 atttggatgaaagatggagacgcgtttgtgttcct 22632157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 22060274 - 22060208
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||||||| ||||| | |||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  22060274 tatttatagtactgggct-gaggctagggtttgttaaaattccgcagaaattaggtgatcgggatgga 22060208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 22632320 - 22632286
Alignment:
Q  37 gtttttccgtgttctgctgtgtgattcagtgtgtt 71  Q
    ||||||||||||||||||||||||| |||||||||    
T  22632320 gtttttccgtgttctgctgtgtgatccagtgtgtt 22632286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 46392880 - 46393002
Alignment:
Q  88 tgtcgttcttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcgga 187  Q
    |||| ||||||||||||||||| |||| |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46392880 tgtctttcttgtgttgtgcaggtctctttttatagtgctgggct-gaggttagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcgga 46392978  T
Q  188 tttggatgaaagatggagacgcgt 211  Q
    ||||||||||||||||||||||||    
T  46392979 tttggatgaaagatggagacgcgt 46393002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 46400628 - 46400750
Alignment:
Q  88 tgtcgttcttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcgga 187  Q
    |||| ||||||||||||||||| |||| |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46400628 tgtctttcttgtgttgtgcaggtctctttttatagtgctgggct-gaggttagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcgga 46400726  T
Q  188 tttggatgaaagatggagacgcgt 211  Q
    ||||||||||||||||||||||||    
T  46400727 tttggatgaaagatggagacgcgt 46400750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 15610014 - 15610080
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15610014 tatttatagtgctgggct-gaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 15610080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 15578970 - 15579036
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15578970 tatttatagtgctgggct-gaggctagggtttgtttaaaatccgcagaaattaggtgatcgggatgga 15579036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 15909664 - 15909598
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15909664 tatttatattgctgggct-gaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 15909598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 15923833 - 15923767
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15923833 tatttatagtgctgggct-gaggctagggtttgtttaaaatccacagaaattaggtgattgggatgga 15923767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 15528602 - 15528636
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||||| ||||||||||||||||||    
T  15528602 tatttatagtgctgggtttgaggctagggtttgtt 15528636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 15537292 - 15537326
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||||| ||||||||||||||||||    
T  15537292 tatttatagtgctgggtttgaggctagggtttgtt 15537326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 6194530 - 6194482
Alignment:
Q  99 tgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    ||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  6194530 tgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtt 6194482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 6202113 - 6202065
Alignment:
Q  99 tgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    ||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  6202113 tgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtt 6202065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 39650213 - 39650095
Alignment:
Q  93 ttcttgtgttgtgcaggg-ctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggatttg 191  Q
    |||||||||||||||||  || |||||||||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  39650213 ttcttgtgttgtgcaggctctatatttatagtgctgggct-gaggctagggtttgttaaaaatccgcagaatttaggtgattgggatggaatcggatttg 39650115  T
Q  192 gatgaaagatggagacgcgt 211  Q
    ||||||||||||||||||||    
T  39650114 gatgaaagatggagacgcgt 39650095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 44370830 - 44370764
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||||||| ||||| | |||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  44370830 tatttatagtactgggct-gaggctagggtttgttaaaattccgcagaaattaggtgatcgggatgga 44370764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 22934802 - 22934751
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  22934802 ttgtgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtt 22934751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 22954660 - 22954609
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  22954660 ttgtgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtt 22954609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 21065235 - 21065200
Alignment:
Q  92 gttcttgtgttgtgcagggctctatttatagtgctg 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  21065235 gttcttgtgttgtgcaggtctctatttatagtgctg 21065200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 22940765 - 22940714
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||| |||||||||||| | || ||||||||| ||||||||||    
T  22940765 ttgtgttgtgcaggtctctatttatagag-tgaggttgaggccagggtttgtt 22940714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 15449791 - 15449860
Alignment:
Q  111 ctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15449791 ctctatttatagtgctgggct-gaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 15449860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 39631035 - 39631086
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  39631035 ttgtgttgtgcaggtctctatttatagtgct-gggctgaggctagggtttgtt 39631086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 39640583 - 39640634
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  39640583 ttgtgttgtgcaggtctctatttatagtgct-gggctgaggctagggtttgtt 39640634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 6031389 - 6031349
Alignment:
Q  87 gtgtcgttcttgtgttgtgcagggctctatttatagtgctg 127  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  6031389 gtgttgttcttgtgttgtgcaggtctctatttatagtgctg 6031349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 5821 - 5733
Alignment:
Q  93 ttcttgtgttgtgcaggg-ctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||| ||||||||||  || |||||||||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  5821 ttcttgcgttgtgcaggctctatatttatagtgctgggct-gaggctagggtttgttaaaaatccgcagaatttaggtgattgggatgga 5733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 20979514 - 20979560
Alignment:
Q  93 ttcttgtgttgtgcagggctctatttatagtgctggggttgaggctag 140  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||    
T  20979514 ttcttgtgttgtgcaggactctatttatagtgct-gggttgaggctag 20979560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 6197399 - 6197435
Alignment:
Q  91 cgttcttgtgttgtgcagggctctatttatagtgctg 127  Q
    ||||||||||||||||||| |||||||||||||||||    
T  6197399 cgttcttgtgttgtgcaggtctctatttatagtgctg 6197435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 6205250 - 6205286
Alignment:
Q  91 cgttcttgtgttgtgcagggctctatttatagtgctg 127  Q
    ||||||||||||||||||| |||||||||||||||||    
T  6205250 cgttcttgtgttgtgcaggtctctatttatagtgctg 6205286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 60896 - 60810
Alignment:
Q  97 tgtgttgtgcagggctctatttatagtgctggggttgaggct--agggtttgtttaaaa-tccgcagaaattaggtgattgggatgga 181  Q
    |||||||||||||    |||||||||||||||| ||||| ||  |||||||||| |||| ||| ||||||||||||||||||||||||    
T  60896 tgtgttgtgcaggttgttatttatagtgctggg-ttgagactttagggtttgttaaaaagtccacagaaattaggtgattgggatgga 60810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 56609 - 56569
Alignment:
Q  87 gtgtcgttcttgtgttgtgcagggctctatttatagtgctg 127  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  56609 gtgttgttcttgtgttgtgcaggtctctatttatagtgctg 56569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 16911 - 16871
Alignment:
Q  87 gtgtcgttcttgtgttgtgcagggctctatttatagtgctg 127  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  16911 gtgttgttcttgtgttgtgcaggtctctatttatagtgctg 16871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 2269 - 2323
Alignment:
Q  93 ttcttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    ||||||||||||||||| ||||||||||||  || |||||| ||||||||||||||    
T  2269 ttcttgtgttgtgcaggtctctatttatagcact-gggttggggctagggtttgtt 2323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 42017373 - 42017407
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||||| ||||||||||||||||||    
T  42017373 tatttatagtgctgggtttgaggctagggtttgtt 42017407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 5651050 - 5651106
Alignment:
Q  92 gttcttgtgttgtgcagg-gctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    ||||||||||||||||||  || ||||||||||||| ||| |||||||||||||||||    
T  5651050 gttcttgtgttgtgcaggctctatatttatagtgct-gggctgaggctagggtttgtt 5651106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University