View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11784_high_4 (Length: 652)
Name: NF11784_high_4
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 293
Target Start/End: Original strand, 33659416 - 33659690
Alignment:
| Q |
19 |
atcctcactaccccgtacaaaattcctccagttacatggtctcacctccccacattccctacctcagtatctcgctcttgctaacctagctttttagatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33659416 |
atcctcactaccccgtacaaaattcctccagttacatggtctcacctccccacattccctacctcagtatctcgctcttgctaacctagctttttagatt |
33659515 |
T |
|
| Q |
119 |
ttgtggggtacctctttcaaaccaaaggcccatgagccaaccgttgagagtctatttggtttcaaaaaacatttattttcatttactgttttcactttta |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33659516 |
ttgtggggtacctctttcaaaccaaaggcccatgagccaaccgttgagagtctatttggtttcaaaaaacatttattttcatttactgttttcactttta |
33659615 |
T |
|
| Q |
219 |
attacaaaaataccactgttttcacttgtgtccaaaatatatcaaactattttctgttcaaaatattgaaagcag |
293 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33659616 |
attacaaaaataccaatgttttcacttgtgtccaaaatatatcaaactattttctgttcaaaatattgaaagcag |
33659690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 371 - 639
Target Start/End: Original strand, 33659769 - 33660037
Alignment:
| Q |
371 |
cagacagatcgttagccttttcccttccccccaacagactagtgcctagcatccttcatccataatttaatatatattgttcaatgattttccaatttct |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33659769 |
cagacagatcgttagccttttcccttccccctaacagactagtgcctagcatccttcatccataatttaatatatattgttcaatgattttccaatttct |
33659868 |
T |
|
| Q |
471 |
atgctttcccatgttaaagtcaaataattatatcatgcacatgtatacgaacatcattctcaaaacaaagttttgtgcttcaactttcattccaaataat |
570 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33659869 |
atgctttcccatgttaaagtcaaataattatatcatgcacatgtatacgaacatcattctcaaaacaaagttttgtgcttcaactttcattccaaataat |
33659968 |
T |
|
| Q |
571 |
gtgctagtgttctcccaaggcatgaaaacgcaatttttccacataaatgtcaagcttaaaatatctcct |
639 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33659969 |
gtgctagtgttctcccacggcatgaaaacgcaatttttccacataaatgtcaagcttaaaatatctcct |
33660037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 5070182 - 5070150
Alignment:
| Q |
194 |
ttttcatttactgttttcacttttaattacaaa |
226 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
5070182 |
ttttcatttcctgttttcacttttaattacaaa |
5070150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 231
Target Start/End: Original strand, 41373315 - 41373354
Alignment:
| Q |
192 |
tattttcatttactgttttcacttttaattacaaaaatac |
231 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
41373315 |
tattttcatttcctgtttttacttttaattacaaaaatac |
41373354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University