View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11784_high_5 (Length: 605)
Name: NF11784_high_5
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 9 - 586
Target Start/End: Original strand, 51729397 - 51729973
Alignment:
| Q |
9 |
gaagcagagaagagctttgagtaggccttggtttggtctttcatggagtaactgagaaaatcttgttgagtagaacaagaaaaatggcaaaccccatatc |
108 |
Q |
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| T |
51729397 |
gaagcagagaagagctttgagtaggccttggtttggtctttcatggagtaactgagaaaatcttgttgaatagaacaagaaaaatggcaaaccccatatc |
51729496 |
T |
|
| Q |
109 |
caataatgtggaactgtccaatgcaaagtccttatcaacatggtgcatggttttccttcaattccttcaaaaacaaagtcagcactagttatannnnnnn |
208 |
Q |
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| T |
51729497 |
caataatgtggaactgtccaatgcaaagtccttatcaacatggtgcatggttttccttcaattccttcaaaaacaaagtcagcactagttatattttttt |
51729596 |
T |
|
| Q |
209 |
gacaaagcaattaattacttatacttgtaaatgttgatgtttacgaaacaaaagaaagaattgtagtttgacaaattaaataatgtctacttttttccaa |
308 |
Q |
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| T |
51729597 |
aacaaagcaattaattacttatacttgtaaatgttgatgtttacgaaacaaaagaaagaattgtagtttgacaaattaaataatgtcgacttttttccaa |
51729696 |
T |
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| Q |
309 |
cnnnnnnnnnactagtgtaaaactggcacacgtggctctaatttatgtgggnnnnnnnngatgatagtgagagtcaagtcattgaaattcattttctcaa |
408 |
Q |
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| T |
51729697 |
ctttttttttactagtgtaaaactggcacacgtggctctaatttatgtgggaaaaaaa-gatgaaagtgagagtcaagtcattgaaattcattttctcaa |
51729795 |
T |
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| Q |
409 |
ttcaattgttgcaactatttttgttgttgaacatgggttttgcttaaattgtattttgacactttcaagtgtctatgtagaaatttgacaaggataaaca |
508 |
Q |
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| T |
51729796 |
ttcaattgttgcaactatttttgttgttgaacatgggttttgcttaaattgtattttgacactttcaagtgtctatgtagaaattttacaaggataaaca |
51729895 |
T |
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| Q |
509 |
caatgatactatttataagataaatcaaggtgtgtttctatgctagtgaatgagtgccctggtaaaaatattgtgcac |
586 |
Q |
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| T |
51729896 |
caatgatactatttataagataaatcaaggtgtgtttctatgctagtgaatgagtgccctggtaaaaatattgtgcac |
51729973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 19055989 - 19055897
Alignment:
| Q |
68 |
atcttgttgagtagaacaagaaaaatggcaaaccccatatccaataatgtggaactgtccaatgcaaagtccttatcaacatggtgcatggtt |
160 |
Q |
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| T |
19055989 |
atcttgttgcatagaacatgaaaaatggtattccccacatcctataatgtggaagtgtccaatgcaaactccttatgatcattgtgcatggtt |
19055897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 19189210 - 19189302
Alignment:
| Q |
68 |
atcttgttgagtagaacaagaaaaatggcaaaccccatatccaataatgtggaactgtccaatgcaaagtccttatcaacatggtgcatggtt |
160 |
Q |
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| T |
19189210 |
atcttgttgcatagaacatgaaaaatggtattccccacatcctataatgtggaagtgtccaatgcaaactccttatgaccattgtgcatggtt |
19189302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 177
Target Start/End: Original strand, 6897120 - 6897257
Alignment:
| Q |
40 |
tttggtctttcatggagtaactgagaaaatcttgttgagtagaacaagaaaaatggcaaaccccatatccaataatgtggaactgtccaatgcaaagtcc |
139 |
Q |
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| T |
6897120 |
tttggtgtttgatggaggaactgtgcagatcttgttgagtagaacatgaaaaatggtactccccaaatccaaaaatggggaagtatccaatgcaatcttc |
6897219 |
T |
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| Q |
140 |
ttatcaacatggtgcatggttttccttcaattccttca |
177 |
Q |
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| T |
6897220 |
tgactatcatggtgcatggtttcccttcaggtccttca |
6897257 |
T |
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