View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11784_high_8 (Length: 510)
Name: NF11784_high_8
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Complemental strand, 47081087 - 47080591
Alignment:
| Q |
1 |
gtgcaacacttgacgtagatggaaacttgagattgtatgaacaccaatttcattttgaaggcaataatagctctcgtgtggtaatgctgtggaaagcact |
100 |
Q |
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| T |
47081087 |
gtgcaacacttgacgtagatggaaacttgagattgtatgaacaccaatttcattttgaaggcaacaatagctctcgtgtggtaatgttgtggaaagcact |
47080988 |
T |
|
| Q |
101 |
taatgagacatgtttagtgaaggggttttgtgggttgaacagttattgcacttccaacatcagcagtgatgctgtctgcaagtgttatcctggtttcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47080987 |
taatgagacatgtttagtgaaggggttttgtgggttgaacagttattgcacttccaacatcagcagtgatgctgtctgcaagtgttatcctggtttcatc |
47080888 |
T |
|
| Q |
201 |
ctttccgagaccaaaagtaatcctaaattgcctatggactgcgtacagaaacatagcaaagatgactgtgaaagcagcgaaggcacggcgttatataatt |
300 |
Q |
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| T |
47080887 |
ctttccgagaccaaaagtaatcctaaattgcctatggactgcgtacagaaacatagcaaagatgactgtgaaagcagcgaaggcacggcgttatataatt |
47080788 |
T |
|
| Q |
301 |
atactaactttaaaaatatgtcttggggtgatattccatattctgttatacctgtgatgaacatgaaaacttgtgagcaggcttgccaagaagattgtgt |
400 |
Q |
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| T |
47080787 |
atactaactttaagaatatgtcttggggtgatattccatattctgttatacctgtgatgaacatgaaaacttgtgagcaggcttgccaagaagattgtgt |
47080688 |
T |
|
| Q |
401 |
ttgcgggggagcaatatatacaaacactagctgcaataaatataggcttccacttatttatggcagggttcaaaatgattcttccaccgtgtctgtg |
497 |
Q |
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| T |
47080687 |
ttgcgggggagcaatatatacaaacactagctgcaataaatataggcttccacttatttatggcagggttcaaaatgattcttccaccgtgtctgtg |
47080591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 47060670 - 47061150
Alignment:
| Q |
1 |
gtgcaacacttgacgtagatggaaacttgagattgtatgaacaccaatttcattttgaaggcaataatagctctcgtgtggtaatgctgtggaaagcact |
100 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||| ||||||||| | ||||| |||| |||||||| ||||||||||| ||||| ||||||| |
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| T |
47060670 |
gtgcaacgtttgatgtagatggaaacttgagattgtatgagcaccaatttgactttgagagcaagaatagctcgcgtgtggtaatcttgtggcaagcact |
47060769 |
T |
|
| Q |
101 |
taatgagacatgtttagtgaaggggttttgtgggttgaacagttattgcacttccaacatcagcagtgatgctgtctgcaagtgttatcctggtttcatc |
200 |
Q |
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|||||| || ||| |||||||||||||||||||||||||||||||||| | | ||| || ||| |||||||||| ||||| |||||||||||||||||| |
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| T |
47060770 |
taatgacacttgtcaagtgaaggggttttgtgggttgaacagttattgctccttcaatatgagcggtgatgctgtatgcaaatgttatcctggtttcatc |
47060869 |
T |
|
| Q |
201 |
ctttccgagaccaaaagtaatcctaaattgcctatggactgcgtacagaaacatagcaaagatgactgtgaaagcagcgaag---gcacggcgttatata |
297 |
Q |
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| |||| | || ||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| |||| | ||| ||| |||| |
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| T |
47060870 |
ccttccaacactaaaag---------cgtgcctatagactgcgtacagacgcatagcaaagatgactgtgaaagcattgaagaccgaacgttgttgtata |
47060960 |
T |
|
| Q |
298 |
attatactaactttaaaaatatgtcttggggtgatattccatattctgttatacctgtgatga---acatgaaaacttgtgagcaggcttgccaagaaga |
394 |
Q |
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||| |||| ||||| | |||||| |||||| ||| ||||||||||||||||||| ||| ||| | ||| | ||||||||| ||||||||| | |||| |
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| T |
47060961 |
attttactcactttgagaatatgcattggggggatgttccatattctgttatacccgtgttgattgatatggatacttgtgagaaggcttgccgacaaga |
47061060 |
T |
|
| Q |
395 |
ttgtgtttgcgggggagcaatatatacaaacactagctgcaataaatataggcttccacttatttatggcagggttcaaaatgattcttc |
484 |
Q |
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||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||| | |||| | |||||||||||||||| |
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| T |
47061061 |
ttgtgtttgtgggggagcaatatataccaacggcagctgcaataaatataggcttccacttatacacggcaagtttcaaaatgattcttc |
47061150 |
T |
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