View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11784_low_1 (Length: 925)
Name: NF11784_low_1
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_low_1 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 753; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 1 - 814
Target Start/End: Complemental strand, 26629573 - 26628760
Alignment:
| Q |
1 |
taatgcaatgaacaaacttaagggaaagaagccttggactctgacattctcgtatggaagggcacttcagcaaagtactcttaaggcatggggtggaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26629573 |
taatgcaatgaacaaacttaagggaaagaagccttggactcttacattctcttatggaagggcacttcagcaaagtactcttaaggcatggggtggaaaa |
26629474 |
T |
|
| Q |
101 |
gatgaaaacattcctaaggctcaagctgcattgcttgttaggtgtaaagcaaattcagaagcaactcttggaacttatcaaggtaatgctaaccttggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26629473 |
gatgaaaacattcctaaggctcaagctgcattgcttgttaggtgtaaagcaaattcagaagcaactcttggaacttatcaaggtaatgctaaccttggtg |
26629374 |
T |
|
| Q |
201 |
atggtgcttcagagtctcttcatgttaaggactacaaatactaatatattaagagggttgtgaggctctgattgaacttgttttggagttgtatgcatca |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26629373 |
atggtgcttcggagtctcttcatgttaaggactacaaatactaatatgttaagagggttgtgaggctctgattgaacttgttttggagttgtatgcatca |
26629274 |
T |
|
| Q |
301 |
tggttatggtgctattttgtagggttacaatagtgtttgtttttgtttaggttggttgtggtaaagtatgaataatggcttcaagctgaactggcttgat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
26629273 |
tggttatggtgctattttgtagggttacaatagtgtttgtttttgtttaggttggttgtggtaaagtatcaataatggcttcaagctgaactggcttgat |
26629174 |
T |
|
| Q |
401 |
tggcatttatttttcaacatggttatgttatgtgtacactttttccatcacacatttttcacgctactttttcattgtgtaataaaacaagagaaatatg |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26629173 |
tggcatttatttttcaacatggttatgttatgtttaccctttttccatcacacatttttcacactactttttcattgtgtaataaaacaagagaaatatg |
26629074 |
T |
|
| Q |
501 |
cttcttaataccaaaagcgtgtgaaacaaaaaagtgtaaagcagaaagtggtgtgtaagaagcatttctatgtaacttttccccttttaattgagnnnnn |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26629073 |
cttcttaataccaaaagcgtgtgaaacaaaaaagtgtaaagcagaaagtggtgtgtaagaagcatttctatgtaacttttccccttttaattgagttttt |
26628974 |
T |
|
| Q |
601 |
nnaggcctttcctccaattgcttttctatcattccatgtattgaacgtattctgttttttcttatataaatgcactgcatattgaattataaagcacatt |
700 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26628973 |
ttaggcctttcctccaattgcttttctatcattccatgtattgaaagtattctgttttttcttatataaatgcactgcatattgaattataaagcacatt |
26628874 |
T |
|
| Q |
701 |
tttgcgactgcatacattttgaaagctcattttttcgctcaccatttattcacacacattggtgtaatagtttgttattaatccataatcatgtttagta |
800 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26628873 |
tttgtgactgcatacattttgaaagctcattttttcgctcaccatttattcacacacattggtgtaatagtttgttattaatccataatcatgtttagta |
26628774 |
T |
|
| Q |
801 |
gagttaagtttgtt |
814 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26628773 |
gagttaagtttgtt |
26628760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 805 - 914
Target Start/End: Complemental strand, 26628743 - 26628634
Alignment:
| Q |
805 |
taagtttgttagttagttacataagacttgcactctaagttatgtatataaatattttgtaactcctcaattcattaatcaatgaacataacaacttccc |
904 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
26628743 |
taagtttgttagttagttacataagacttgcactctaagttatgtatataaatattttgtaactcctcaattaattaatcaatgaacataacaactttcc |
26628644 |
T |
|
| Q |
905 |
aatactctct |
914 |
Q |
| |
|
|||||||||| |
|
|
| T |
26628643 |
aatactctct |
26628634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 805 - 869
Target Start/End: Original strand, 31684043 - 31684108
Alignment:
| Q |
805 |
taagtttgttagttagttacataagacttgcactctaagttatgtatataaatatt-ttgtaactc |
869 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
31684043 |
taagtttgttagtttgttacaagtgacttgcactctaagtcatgtatataaatattcttgtaactc |
31684108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 805 - 858
Target Start/End: Complemental strand, 29982707 - 29982653
Alignment:
| Q |
805 |
taagtttgttagttagttacat-aagacttgcactctaagttatgtatataaata |
858 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
29982707 |
taagtttgttagttagctacatgaagacttgttctctaagttatgtatataaata |
29982653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 805 - 912
Target Start/End: Complemental strand, 41645501 - 41645394
Alignment:
| Q |
805 |
taagtttgttagttagttacataagacttgcactctaagttatgtatataaatattttgtaactcctcaattcattaatcaatgaacataacaacttccc |
904 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| || |||||||||| ||||||||||| ||||| | |
|
|
| T |
41645501 |
taagtttgttagttagttacaagagactcgcactctaagtcatgtatataaatattttgtaacttctttattcattaattaatgaacataataacttttc |
41645402 |
T |
|
| Q |
905 |
aatactct |
912 |
Q |
| |
|
|||||||| |
|
|
| T |
41645401 |
aatactct |
41645394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 761 - 814
Target Start/End: Complemental strand, 41645572 - 41645519
Alignment:
| Q |
761 |
ggtgtaatagtttgttattaatccataatcatgtttagtagagttaagtttgtt |
814 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
41645572 |
ggtgtattagtttgttattaatccataaccatgtttagtagagttaagtgtgtt |
41645519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 805 - 867
Target Start/End: Original strand, 41481218 - 41481280
Alignment:
| Q |
805 |
taagtttgttagttagttacataagacttgcactctaagttatgtatataaatattttgtaac |
867 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || |||||||||| | |||||| |
|
|
| T |
41481218 |
taagtttgttagttagttacataagacttgttctctaagtcatatatataaatactatgtaac |
41481280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 768 - 807
Target Start/End: Original strand, 41481154 - 41481193
Alignment:
| Q |
768 |
tagtttgttattaatccataatcatgtttagtagagttaa |
807 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
41481154 |
tagtttcttattaatccataataatgtttagtagagttaa |
41481193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 812 - 912
Target Start/End: Complemental strand, 12103501 - 12103399
Alignment:
| Q |
812 |
gttagttagttacataagacttgcactctaagttatgtatataaatattttgtaactcctcaattcattaatcaatgaa--cataacaacttcccaatac |
909 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||| |||||| | ||| |||| | |||||||||| |||||||||| ||||||| |
|
|
| T |
12103501 |
gttagttagttacataagatttgctctctaagttatgtatataaatactttgtagtttctctattcgtcaatcaatgaaacaataacaactttccaatac |
12103402 |
T |
|
| Q |
910 |
tct |
912 |
Q |
| |
|
||| |
|
|
| T |
12103401 |
tct |
12103399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 768 - 806
Target Start/End: Complemental strand, 3788790 - 3788752
Alignment:
| Q |
768 |
tagtttgttattaatccataatcatgtttagtagagtta |
806 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3788790 |
tagtttgttattaatccataatcatgtttagtagagtta |
3788752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 763 - 814
Target Start/End: Complemental strand, 12103577 - 12103525
Alignment:
| Q |
763 |
tgtaatagtttgttattaatcca-taatcatgtttagtagagttaagtttgtt |
814 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
12103577 |
tgtattagtttgttattaatccaataatcatgtttagtagagttaattttgtt |
12103525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 809 - 901
Target Start/End: Complemental strand, 30912862 - 30912771
Alignment:
| Q |
809 |
tttgttagttagttacataagacttgcactctaagttatgtatataaatattttgtaactcctcaattcattaatcaatgaacataacaactt |
901 |
Q |
| |
|
||||||||||||| ||| ||||||||| |||||| ||||||||||| | |||||||| ||| ||||||||||||||||| |||||||||| |
|
|
| T |
30912862 |
tttgttagttagtaacaagtgacttgcaccctaagtcatgtatataaac-tcttgtaacttctctattcattaatcaatgaagataacaactt |
30912771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 805 - 869
Target Start/End: Complemental strand, 11749728 - 11749663
Alignment:
| Q |
805 |
taagtttgttagttagttacataagacttgcactctaagttatgtatataaatatt-ttgtaactc |
869 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
11749728 |
taagtttgttagtttgttacaagtgacttgcactctaagtcatgtatataaatattcttgtaactc |
11749663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 839 - 910
Target Start/End: Complemental strand, 10878604 - 10878533
Alignment:
| Q |
839 |
ctaagttatgtatataaatattttgtaactcctcaattcattaatcaatgaacataacaacttcccaatact |
910 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||| |||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
10878604 |
ctaagttatgtatataaatactatgtaaactctctattcatcaatcaatgaaaataacaactttccaatact |
10878533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 29233242 - 29233172
Alignment:
| Q |
164 |
actcttggaacttatcaaggtaatgctaaccttggtgatggtgcttcagagtctcttcatgttaaggacta |
234 |
Q |
| |
|
|||||||||||||| | ||||| |||| ||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
29233242 |
actcttggaacttacaagggtaactctaaacttggtgctggtgcatcagagagtcttcatgttaaggacta |
29233172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 29233380 - 29233298
Alignment:
| Q |
26 |
aagaagccttggactctgacattctcgtatggaagggcacttcagcaaagtactcttaaggcatggggtggaaaagatgaaaa |
108 |
Q |
| |
|
|||||||| |||||||| | ||||| | ||||| ||||||||| || ||||| |||||||||||| ||||||||| ||||| |
|
|
| T |
29233380 |
aagaagccatggactctttctttctcttttggaatggcacttcaacagagtacccttaaggcatggtctggaaaagaagaaaa |
29233298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 768 - 814
Target Start/End: Original strand, 36948649 - 36948695
Alignment:
| Q |
768 |
tagtttgttattaatccataatcatgtttagtagagttaagtttgtt |
814 |
Q |
| |
|
|||||||| ||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
36948649 |
tagtttgtgattaatccataattatgtttcctagagttaagtttgtt |
36948695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 29236992 - 29236919
Alignment:
| Q |
164 |
actcttggaacttatcaaggtaatgctaaccttggtgatggtgcttcagagtctcttcatgttaaggactacaa |
237 |
Q |
| |
|
|||||||||||||| | ||||| | || ||||||| |||||| |||||| ||||||||||||||||||||| |
|
|
| T |
29236992 |
actcttggaacttacaagggtaactccaaacttggtgctggtgcctcagagagtcttcatgttaaggactacaa |
29236919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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