View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11784_low_10 (Length: 503)
Name: NF11784_low_10
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 485; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 1 - 493
Target Start/End: Complemental strand, 48325674 - 48325182
Alignment:
| Q |
1 |
ctgaagttgaagatccttttgtatgcttttcaaaagaaccaatacttgaagagcctttggtacgcttttcagaagaaccaactcttgaagaacttttggt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48325674 |
ctgaagttgaagatccttttgtatgcttttcaaaagaaccaatacttgaagagcctttggtacgcttttcagaagaaccaactcttgaagaacttttggt |
48325575 |
T |
|
| Q |
101 |
atgctttttagaagtaccgatactgtcccttgttggatcatcaacattactagagaattccacacccaaaccaagtgatttcggcctttggataacctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48325574 |
atgctttttagaagtaccgatactgtcccttgttggatcatcaacattactagagaattccacacccaaaccaagtgatttcggcctttggataacctca |
48325475 |
T |
|
| Q |
201 |
atgggctgagccataccttgaccatttttccccaatccccctccttcagtgtatcccattttagccatcattttggaaccaaaaccagtagtgtgtacct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48325474 |
atgggctgagccataccttgaccatttttccccaatccccctccttcagtgtatcccattttagccatcattttggaaccaaaaccagtagtgtgtacct |
48325375 |
T |
|
| Q |
301 |
caaaagaaccaacattagcagagctggtggcacccttcttatttacactatcagtctcttcagaatcaacagcaataatttgtacagtttctgagtggat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
48325374 |
caaaagaaccaacattagcagagctggtggcacccttcttatttgcactatcagtctcttcagaatcaacagcaataacttgtacagtttctgagtggat |
48325275 |
T |
|
| Q |
401 |
tgtgccgcttgatacaaatgacactggctgattagcatatgaacccttttgttcactccctttattgtccttcactttacgtctgtctctgct |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48325274 |
tgtgccgcttgatacaaatgacactggctgattagcatatgaacccttttgttcactccctttattgtccttcactttacgtctgtctctgct |
48325182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 48325714 - 48325600
Alignment:
| Q |
6 |
gttgaagatccttttgtatgcttttcaaaagaaccaatac------ttgaagagcctttggtacgcttttcagaagaaccaactcttgaagaacttttgg |
99 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| ||| |||||||| ||||||||| |||||||| | ||||| |
|
|
| T |
48325714 |
gttgaagatcctttggtatgcttttcaaaagaaccaatacctgaagttgaagatccttttgtatgcttttcaaaagaaccaatacttgaagagcctttgg |
48325615 |
T |
|
| Q |
100 |
tatgctttttagaag |
114 |
Q |
| |
|
|| |||||| ||||| |
|
|
| T |
48325614 |
tacgcttttcagaag |
48325600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University