View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11784_low_11 (Length: 464)

Name: NF11784_low_11
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11784_low_11
NF11784_low_11
[»] chr5 (8 HSPs)
chr5 (16-449)||(15287869-15288302)
chr5 (25-338)||(15265828-15266141)
chr5 (35-231)||(15257416-15257612)
chr5 (67-221)||(15262178-15262332)
chr5 (61-195)||(15274466-15274600)
chr5 (261-338)||(15262360-15262437)
chr5 (259-447)||(15283850-15284038)
chr5 (388-449)||(15265720-15265781)
[»] chr3 (2 HSPs)
chr3 (62-221)||(51382853-51383012)
chr3 (351-444)||(51383130-51383223)
[»] chr8 (1 HSPs)
chr8 (61-195)||(44248765-44248899)
[»] chr7 (2 HSPs)
chr7 (61-221)||(11807657-11807817)
chr7 (350-420)||(11807467-11807537)
[»] chr4 (1 HSPs)
chr4 (148-222)||(42525216-42525290)


Alignment Details
Target: chr5 (Bit Score: 426; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 15288302 - 15287869
Alignment:
Q  16 agtgagagatgcatcacaaatggtagacctgatttaggttatctttattggagatggaagccaagtgagtgtaatctaccaagatttgaaccaaacactt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15288302 agtgagagatgcatcacaaatggtagacctgatttaggttatctttattggagatggaagccaagtgagtgtaatctaccaaggtttgaaccaaacactt 15288203  T
Q  116 tcctcaaactcattaagaacaaacatatagcttttgttggagattctttggctaggaaccaattagagtcacttctttgcatgttatcgactacttcaac 215  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15288202 tcctcaatctcattaagaacaaacatatagcttttgttggagattctttggctaggaaccaattagagtcacttctttgcatgttatcgactacttcaac 15288103  T
Q  216 acctaaccttgtttaccaagatggcaagtccaataaatttcgtaagtggcactttccttctcataatgctaccttttctttgtattggtccccatttcta 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15288102 acctaaccttgtttaccaagatggcaagtccaataaatttcgtaagtggcactttccttctcataatgctaccttttctttgtattggtccccatttcta 15288003  T
Q  316 gtgcatggtgttgaaagatcaaatgaagggaattattataatacaatgtttttggatcttgtcaatgagaggtgggcaaaggatattgatcaaatggaca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15288002 gtgcatggtgttgaaagatcaaatgaagggaattattataatacaatgtttttggatcttgtcaatgagaggtgggcaaaggatattgatcaaatggaca 15287903  T
Q  416 tgattgttgtatcaactggccattggtttttgct 449  Q
    ||||||||||||||||||||||||||||||||||    
T  15287902 tgattgttgtatcaactggccattggtttttgct 15287869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 25 - 338
Target Start/End: Complemental strand, 15266141 - 15265828
Alignment:
Q  25 tgcatcacaaatggtagacctgatttaggttatctttattggagatggaagccaagtgagtgtaatctaccaagatttgaaccaaacactttcctcaaac 124  Q
    ||||| ||| |||| ||||||||||  | ||||||||||||||||||||| |||| ||| || || || ||||| |||||||| |||||||| ||| |||    
T  15266141 tgcatgacacatgggagacctgattctgattatctttattggagatggaaaccaaatgaatgcaaacttccaaggtttgaacctaacacttttctccaac 15266042  T
Q  125 tcattaagaacaaacatatagcttttgttggagattctttggctaggaaccaattagagtcacttctttgcatgttatcgactacttcaacacctaacct 224  Q
    | | |||||||||||| || ||||||||||| |||||||| |||||||||||||||||||| |||||||| |||||| | ||||||||||  ||||| ||    
T  15266041 ttagtaagaacaaacacattgcttttgttggtgattctttagctaggaaccaattagagtctcttctttgtatgttagcaactacttcaattcctaaact 15265942  T
Q  225 tgtttaccaagatggcaagtccaataaatttcgtaagtggcactttccttctcataatgctaccttttctttgtattggtccccatttctagtgcatggt 324  Q
    ||| |||||| ||||||||  |||| |||||  || |||| ||||| ||||  | ||| | ||| |||| ||||||||||| |||||| |||| || |||    
T  15265941 tgtgtaccaaaatggcaaggacaatcaattttctaggtggtacttttcttcatacaattcaaccatttccttgtattggtctccatttttagtacaaggt 15265842  T
Q  325 gttgaaagatcaaa 338  Q
     | |||| ||||||    
T  15265841 atagaaaaatcaaa 15265828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 15257612 - 15257416
Alignment:
Q  35 atggtagacctgatttaggttatctttattggagatggaagccaagtgagtgtaatctaccaagatttgaaccaaacactttcctcaaactcattaagaa 134  Q
    |||| ||||| ||||  |||||||| || ||||||||||| |||||||| ||||| || ||||| ||||| || |||||||| ||  || ||||| | ||    
T  15257612 atggaagaccagattctggttatctatactggagatggaaaccaagtgaatgtaagcttccaaggtttgagcctaacacttttcttcaattcattgaaaa 15257513  T
Q  135 caaacatatagcttttgttggagattctttggctaggaaccaattagagtcacttctttgcatgttatcgactacttcaacacctaaccttgtttac 231  Q
    |||||| || ||||||||||| |||||| ||||||||||||| |||||||||||||||||  ||||||| | |  |||||||||| | |||||||||    
T  15257512 caaacacatggcttttgttggtgattctatggctaggaaccagttagagtcacttctttgtttgttatctagtgtttcaacacctgatcttgtttac 15257416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 15262178 - 15262332
Alignment:
Q  67 agatggaagccaagtgagtgtaatctaccaagatttgaaccaaacactttcctcaaactcattaagaacaaacatatagcttttgttggagattctttgg 166  Q
    |||||||| |||| |||||| || || ||||| ||||||||||||||||| ||| |||| |  || |||| ||| ||| ||||||||||||||||||| |    
T  15262178 agatggaaaccaaatgagtgcaaacttccaaggtttgaaccaaacacttttctccaactaagcaaaaacagacacatatcttttgttggagattctttag 15262277  T
Q  167 ctaggaaccaattagagtcacttctttgcatgttatcgactacttcaacacctaa 221  Q
    |||| |||||||| ||||| ||||||||||||||||| |||  ||||| ||||||    
T  15262278 ctagaaaccaatttgagtctcttctttgcatgttatcaactgtttcaaaacctaa 15262332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 61 - 195
Target Start/End: Original strand, 15274466 - 15274600
Alignment:
Q  61 tattggagatggaagccaagtgagtgtaatctaccaagatttgaaccaaacactttcctcaaactcattaagaacaaacatatagcttttgttggagatt 160  Q
    |||||||||||||| ||||  |||||| |||| ||||  ||||||||||||||||| || | |||||| || ||||   | ||||||||||||||||| |    
T  15274466 tattggagatggaaaccaaaggagtgtgatcttccaatttttgaaccaaacacttttcttacactcatcaacaacatgaacatagcttttgttggagact 15274565  T
Q  161 ctttggctaggaaccaattagagtcacttctttgc 195  Q
    |||| |||||||||||| ||||||| ||| |||||    
T  15274566 ctttagctaggaaccaaatagagtcccttgtttgc 15274600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 338
Target Start/End: Original strand, 15262360 - 15262437
Alignment:
Q  261 gtggcactttccttctcataatgctaccttttctttgtattggtccccatttctagtgcatggtgttgaaagatcaaa 338  Q
    |||||| ||||||||||| ||||| || || ||| |||||||||| |||||||| ||||| |||| ||||||||||||    
T  15262360 gtggcattttccttctcacaatgcaacattatctgtgtattggtcgccatttcttgtgcaaggtgatgaaagatcaaa 15262437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 447
Target Start/End: Original strand, 15283850 - 15284038
Alignment:
Q  259 aagtggcactttccttctcataatgctaccttttctttgtattggtccccatttctagtgcatggtgttgaaagatcaaatgaagggaattattataata 358  Q
    |||||| | ||||||||||| ||||| | |||  | || |||||||| |||||||| ||| | |||| | |||||  |||||| |||    | |||||||    
T  15283850 aagtggtattttccttctcacaatgcaaacttgacattctattggtcaccatttcttgtgaagggtgatcaaagaaaaaatgatgggccacaatataata 15283949  T
Q  359 caatgtttttggatcttgtcaatgagaggtgggcaaaggatattgatcaaatggacatgattgttgtatcaactggccattggtttttg 447  Q
    |||| | |||||||| ||| ||||| | |||||||| |||||| ||| |||||||| |||||||| | |||  ||| ||||||||||||    
T  15283950 caatatatttggatcatgtaaatgaaatgtgggcaagggatatggataaaatggacttgattgttttgtcatttggtcattggtttttg 15284038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 449
Target Start/End: Complemental strand, 15265781 - 15265720
Alignment:
Q  388 tgggcaaaggatattgatcaaatggacatgattgttgtatcaactggccattggtttttgct 449  Q
    ||||||||||||||  | |||||||||||||||||  |||||| ||| ||||||||||||||    
T  15265781 tgggcaaaggatatgaaccaaatggacatgattgtactatcaattggacattggtttttgct 15265720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 62 - 221
Target Start/End: Original strand, 51382853 - 51383012
Alignment:
Q  62 attggagatggaagccaagtgagtgtaatctaccaagatttgaaccaaacactttcctcaaactcattaagaacaaacatatagcttttgttggagattc 161  Q
    ||||||||||||| |||||||||||| ||||  |||  |||||||||||||| || || |||||||| || ||||  |||||||||||||||||||| ||    
T  51382853 attggagatggaaaccaagtgagtgtcatctttcaaattttgaaccaaacacatttcttaaactcatcaacaacatgcatatagcttttgttggagactc 51382952  T
Q  162 tttggctaggaaccaattagagtcacttctttgcatgttatcgactacttcaacacctaa 221  Q
    |||  ||||||||||| | ||||| ||| | ||| | ||||| ||| |||||| ||||||    
T  51382953 tttatctaggaaccaaattgagtcccttatatgcttattatccactgcttcaaaacctaa 51383012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 351 - 444
Target Start/End: Original strand, 51383130 - 51383223
Alignment:
Q  351 ttataatacaatgtttttggatcttgtcaatgagaggtgggcaaaggatattgatcaaatggacatgattgttgtatcaactggccattggttt 444  Q
    |||||||||||||| |||||||| |||||||||||||||||| |  ||||| |||||||||||| |||||||  |||||  ||| |||||||||    
T  51383130 ttataatacaatgtatttggatcatgtcaatgagaggtgggctagagatatagatcaaatggacttgattgtgttatcatttggtcattggttt 51383223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 61 - 195
Target Start/End: Complemental strand, 44248899 - 44248765
Alignment:
Q  61 tattggagatggaagccaagtgagtgtaatctaccaagatttgaaccaaacactttcctcaaactcattaagaacaaacatatagcttttgttggagatt 160  Q
    |||||||||||||| |||||||||||| |||| ||||  ||||||||||||||||| || |||||||| || ||||   | ||||||||||||||||| |    
T  44248899 tattggagatggaaaccaagtgagtgtgatcttccaatttttgaaccaaacacttttcttaaactcatcaaaaacatgaacatagcttttgttggagact 44248800  T
Q  161 ctttggctaggaaccaattagagtcacttctttgc 195  Q
    |||| || |  |||||| ||||||| ||| |||||    
T  44248799 ctttagcaaataaccaaatagagtcccttatttgc 44248765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 61 - 221
Target Start/End: Complemental strand, 11807817 - 11807657
Alignment:
Q  61 tattggagatggaagccaagtgagtgtaatctaccaagatttgaaccaaacactttcctcaaactcattaagaacaaacatatagcttttgttggagatt 160  Q
    |||||||||||||| |||| ||||||| |||| ||||  ||||| ||||||||||| || |||||||| |  ||||   | |||| |||||||||||| |    
T  11807817 tattggagatggaaaccaaatgagtgtgatcttccaatttttgacccaaacacttttcttaaactcatgagcaacatgaacatagtttttgttggagact 11807718  T
Q  161 ctttggctaggaaccaattagagtcacttctttgcatgttatcgactacttcaacacctaa 221  Q
    ||||  ||||||||||| ||||||| ||| ||||| | ||||| |||  ||||| ||||||    
T  11807717 ctttatctaggaaccaactagagtcccttatttgcttattatccactgtttcaaaacctaa 11807657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 420
Target Start/End: Complemental strand, 11807537 - 11807467
Alignment:
Q  350 attataatacaatgtttttggatcttgtcaatgagaggtgggcaaaggatattgatcaaatggacatgatt 420  Q
    |||||||||||||   |||||||| ||| | |||||  |||||||||||||| |||||||||||| |||||    
T  11807537 attataatacaatacatttggatcatgtaagtgagaattgggcaaaggatatagatcaaatggacttgatt 11807467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 42525216 - 42525290
Alignment:
Q  148 tttgttggagattctttggctaggaaccaattagagtcacttctttgcatgttatcgactacttcaacacctaac 222  Q
    |||||||  ||||||||||||| ||||||||| ||||||||||| || ||||| || | ||||||||||||||||    
T  42525216 tttgttgctgattctttggctatgaaccaatttgagtcacttctatgtatgttgtcaattacttcaacacctaac 42525290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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