View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11784_low_12 (Length: 456)

Name: NF11784_low_12
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11784_low_12
NF11784_low_12
[»] chr6 (8 HSPs)
chr6 (1-446)||(24192717-24193162)
chr6 (1-359)||(24191620-24191978)
chr6 (1-49)||(1072347-1072395)
chr6 (1-49)||(15530613-15530661)
chr6 (1-51)||(15541631-15541681)
chr6 (1-49)||(8995255-8995303)
chr6 (1-49)||(9019702-9019750)
chr6 (1-49)||(15533172-15533220)
[»] chr2 (4 HSPs)
chr2 (1-44)||(6264615-6264658)
chr2 (1-49)||(40032538-40032586)
chr2 (1-46)||(6259306-6259351)
chr2 (1-49)||(21521186-21521234)
[»] chr5 (6 HSPs)
chr5 (1-49)||(659713-659761)
chr5 (3-51)||(20507955-20508003)
chr5 (1-49)||(21947770-21947818)
chr5 (3-49)||(20504406-20504452)
chr5 (14-49)||(661251-661286)
chr5 (1-51)||(16775895-16775945)
[»] chr3 (6 HSPs)
chr3 (2-49)||(32218836-32218883)
chr3 (1-50)||(48362138-48362187)
chr3 (1-49)||(26720268-26720316)
chr3 (1-49)||(32264532-32264580)
chr3 (14-50)||(18162404-18162440)
chr3 (1-49)||(45882659-45882707)
[»] chr8 (4 HSPs)
chr8 (1-49)||(12517517-12517565)
chr8 (3-49)||(27826782-27826828)
chr8 (3-49)||(27829093-27829139)
chr8 (1-45)||(28252078-28252122)
[»] chr4 (4 HSPs)
chr4 (1-49)||(48486113-48486161)
chr4 (3-50)||(31850092-31850139)
chr4 (16-49)||(9174651-9174684)
chr4 (1-49)||(36920078-36920125)
[»] chr1 (7 HSPs)
chr1 (1-49)||(14098462-14098510)
chr1 (1-49)||(15823286-15823334)
chr1 (14-49)||(39462258-39462293)
chr1 (3-49)||(41646681-41646727)
chr1 (3-44)||(28207540-28207581)
chr1 (1-49)||(13461344-13461392)
chr1 (1-49)||(28840418-28840466)


Alignment Details
Target: chr6 (Bit Score: 406; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 446
Target Start/End: Original strand, 24192717 - 24193162
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcacactctccttcatatttaatctcggatcaaaaattgtcttttcaaagtttaca 100  Q
    ||||||||  || ||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24192717 ccatcgtggcacgatttctgtaaaacctgattttaagttaactctcacactctccttcatatttaatctcggatcaaaaattgtcttttcaaagtttaca 24192816  T
Q  101 ccataaatggatattaatcaccattccaaaatctcttacctttgttgatttaggtattgtggaatgaaattttattacagtgataatactctgaccttct 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24192817 ccataaatggatattaatcaccattccaaaatctcttaccgttgttgatttaggtattgtggaatgaaattttattaaagtgataatactctgaccttct 24192916  T
Q  201 tccttcttatctttctttattgattcctttgtgattggatgcatcaaactatccccttcaaatttcttttcttgaaattggatcttctttaagggtacac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24192917 tccttcttatctttctttattgattcctttgtgattggatgcatcaaactatccccttcaaatttcttttcttgaaattggatcttctttaagggtacac 24193016  T
Q  301 cataaactcatgtttattctcacaagacatgaaaccaaacagctttcataattatgaactttactcctcatcacaaccttcaccattagaactccaagct 400  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24193017 cataaactcatgtttattctcacaagacatgaaaccaaccagctttcataactatgaactttactcctcatcacaaccttcaccattagaactccaagct 24193116  T
Q  401 tcatattcttgtaactctacaaccattgtattgaacttctcctttg 446  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24193117 tcatattcttgtaactctacaaccattgtattgaacttctcctttg 24193162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 24191620 - 24191978
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcacactctccttcatatttaatctcggatcaaaaattgtcttttcaaagtttaca 100  Q
    ||||||||  || ||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24191620 ccatcgtggcacgatttctgtaaaacctgattttaagttaactctcacactctccttcatatttaatctcggatcaaaaattgtcttttcaaagtttaca 24191719  T
Q  101 ccataaatggatattaatcaccattccaaaatctcttacctttgttgatttaggtattgtggaatgaaattttattacagtgataatactctgaccttct 200  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24191720 ccataaatggatattaatcaccattccaaaatctcttactattgttgatttaggtattgtggaatgaaattttattaaagtgataatactctgaccttct 24191819  T
Q  201 tccttcttatctttctttattgattcctttgtgattggatgcatcaaactatccccttcaaatttcttttcttgaaattggatcttctttaagggtacac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24191820 tccttcttatctttctttattgattcctttgtgattggatgcatcaaactatccccttcaaatttcttttcttgaaattggatcttctttaagggtacac 24191919  T
Q  301 cataaactcatgtttattctcacaagacatgaaaccaaacagctttcataattatgaac 359  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  24191920 cataaactcatgtttattctcacaagacatgaaaccaaccagctttcataactatgaac 24191978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1072347 - 1072395
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||| | || ||||||||||| ||||||||||||||||||||||||    
T  1072347 ccatcgtaccacgatttctgcagaacctgattttaagttaactctcaca 1072395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15530613 - 15530661
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||| ||||||| ||||||||||||||||||||||||    
T  15530613 ccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 15530661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 15541631 - 15541681
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcacact 51  Q
    ||||||||  || ||||||||| | ||||||||||||||||||||||||||    
T  15541631 ccatcgtggcacgatttctgcaaatcctgattttaagttaactctcacact 15541681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8995303 - 8995255
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||| || |||| ||||||||||||||||||||||||    
T  8995303 ccatcgtgccacgattcctacagatcctgattttaagttaactctcaca 8995255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9019750 - 9019702
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||| || |||| ||||||||||||||||||||||||    
T  9019750 ccatcgtgccacgattcctacagatcctgattttaagttaactctcaca 9019702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15533172 - 15533220
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||  || ||||||| ||| ||||||||||||||||||||||||    
T  15533172 ccatcgtggcacgatttctgtagatcctgattttaagttaactctcaca 15533220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6264615 - 6264658
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactc 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  6264615 ccatcgtgcaacaatttctgcagaacctgattttaagttaactc 6264658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 40032538 - 40032586
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  40032538 ccatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 40032586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 6259306 - 6259351
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctc 46  Q
    ||||||||| || ||||||||||| |||||||||||||||||||||    
T  6259306 ccatcgtgccacgatttctgcagaacctgattttaagttaactctc 6259351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 21521186 - 21521234
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||| ||| ||| ||||||||||||||||||||||||    
T  21521186 ccatcgtgccacgattcctgtagaacctgattttaagttaactctcaca 21521234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 659761 - 659713
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  659761 ccatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 659713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 20507955 - 20508003
Alignment:
Q  3 atcgtgcaacaatttctgcagagcctgattttaagttaactctcacact 51  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||||||    
T  20507955 atcgtgccacgatttctgcagaacctgattttaagttaactctcacact 20508003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 21947818 - 21947770
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||||    
T  21947818 ccatcgtgccacgatttctgcagaacctgattttaagttaactctcaca 21947770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 20504406 - 20504452
Alignment:
Q  3 atcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||||    
T  20504406 atcgtgccacgatttctgcagaacctgattttaagttaactctcaca 20504452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 661251 - 661286
Alignment:
Q  14 atttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||||| ||||||||||||||||||||||||    
T  661251 atttctgcagaacctgattttaagttaactctcaca 661286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 16775945 - 16775895
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcacact 51  Q
    ||||||||| || ||| ||||||| |||||||||||||||| |||||||||    
T  16775945 ccatcgtgccacgattcctgcagatcctgattttaagttaattctcacact 16775895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 32218883 - 32218836
Alignment:
Q  2 catcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    |||||||| || ||||||||||| ||||||||||||||||||||||||    
T  32218883 catcgtgccacgatttctgcagaacctgattttaagttaactctcaca 32218836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 48362138 - 48362187
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcacac 50  Q
    ||||||||| || |||||| |||| |||||||||||||||||||||||||    
T  48362138 ccatcgtgccacgatttctacagaacctgattttaagttaactctcacac 48362187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26720316 - 26720268
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||| ||||||| ||||||||||||||||||||||||    
T  26720316 ccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 26720268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32264532 - 32264580
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||||||||| | ||||||||||||||||||||||||    
T  32264532 ccatcgtgccacgatttctgcaaaacctgattttaagttaactctcaca 32264580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 18162440 - 18162404
Alignment:
Q  14 atttctgcagagcctgattttaagttaactctcacac 50  Q
    |||| |||||| |||||||||||||||||||||||||    
T  18162440 atttatgcagatcctgattttaagttaactctcacac 18162404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 45882707 - 45882659
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||  || |||| |||||| ||||||||||||||||||||||||    
T  45882707 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 45882659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12517517 - 12517565
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||| ||||||| ||||||||||||||||||||||||    
T  12517517 ccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 12517565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 27826828 - 27826782
Alignment:
Q  3 atcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||| || ||| ||||||| ||||||||||||||||||||||||    
T  27826828 atcgtgccacgattcctgcagatcctgattttaagttaactctcaca 27826782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 27829139 - 27829093
Alignment:
Q  3 atcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||| || ||| ||||||| ||||||||||||||||||||||||    
T  27829139 atcgtgccacgattcctgcagatcctgattttaagttaactctcaca 27829093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28252078 - 28252122
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactct 45  Q
    ||||||||| || ||| ||||||| ||||||||||||||||||||    
T  28252078 ccatcgtgccacgattcctgcagatcctgattttaagttaactct 28252122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 48486161 - 48486113
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||||||||||  ||||||||||||||||||||||||    
T  48486161 ccatcgtgccacgatttctgcaggacctgattttaagttaactctcaca 48486113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 50
Target Start/End: Original strand, 31850092 - 31850139
Alignment:
Q  3 atcgtgcaacaatttctgcagagcctgattttaagttaactctcacac 50  Q
    ||||||| |||||| ||||||| | |||||||||||||||||||||||    
T  31850092 atcgtgccacaattcctgcagatcttgattttaagttaactctcacac 31850139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 9174651 - 9174684
Alignment:
Q  16 ttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| ||||||||||||||||||||||||    
T  9174651 ttctgcagaacctgattttaagttaactctcaca 9174684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 36920078 - 36920125
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || |||| |||||| ||||||||||||||||||||||||    
T  36920078 ccatcgtgccacgattt-tgcagaacctgattttaagttaactctcaca 36920125  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 14098462 - 14098510
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || |||||||||||  |||||||||||||||||||||||    
T  14098462 ccatcgtgccacgatttctgcagaatctgattttaagttaactctcaca 14098510  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15823334 - 15823286
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||| ||||||| ||||||||||||||||||||||||    
T  15823334 ccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 15823286  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 39462293 - 39462258
Alignment:
Q  14 atttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39462293 atttctgcagaacctgattttaagttaactctcaca 39462258  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 41646727 - 41646681
Alignment:
Q  3 atcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||| || ||||||||||| | ||||||||||||||||||||||    
T  41646727 atcgtgccacgatttctgcagaacatgattttaagttaactctcaca 41646681  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 28207540 - 28207581
Alignment:
Q  3 atcgtgcaacaatttctgcagagcctgattttaagttaactc 44  Q
    ||||||| || ||||||||||| |||||||||||||||||||    
T  28207540 atcgtgccacgatttctgcagaacctgattttaagttaactc 28207581  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 13461344 - 13461392
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||  || ||| ||||||| ||||||||||||||||||||||||    
T  13461344 ccatcgtggcacgattcctgcagatcctgattttaagttaactctcaca 13461392  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28840466 - 28840418
Alignment:
Q  1 ccatcgtgcaacaatttctgcagagcctgattttaagttaactctcaca 49  Q
    ||||||||| || ||| ||||||| |||||||||||||||||| |||||    
T  28840466 ccatcgtgccacgattcctgcagatcctgattttaagttaactttcaca 28840418  T

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