View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11784_low_19 (Length: 357)
Name: NF11784_low_19
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 6 - 357
Target Start/End: Complemental strand, 19340619 - 19340262
Alignment:
| Q |
6 |
aaaaaacaacaagagcgagttcagaacagaagctactacacctactagagcnnnnnnnnnnnn--ttgaatgaaaaagcactcagaaaataaaaagagat |
103 |
Q |
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| T |
19340619 |
aaaaaacaacaagagcgagttcagaacagaagctactacacctactagagcagagagagagagagttgaatgaaaaagcactcagaaaataaaaagagat |
19340520 |
T |
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| Q |
104 |
tgattgattcattatatcgaaacaacaataacaaagggtaaaaaatattatgttacgtttggttttattgataattatttataatatatgatccaaatat |
203 |
Q |
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| T |
19340519 |
tgattcattcattatatcgaaacaacaataacaaagggtaaaaaatattatgttacgtttggttttattgataattatttataatatatgatccaaatat |
19340420 |
T |
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| Q |
204 |
tgtggctatcatc----atcttcaaaagttattatcgaatcatgtcatgtgtgaaactccttttattttataaattaatatcaaatatcaataacaaact |
299 |
Q |
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| T |
19340419 |
tgtggctatcatccatcatcttcaaaagttattatcgaatcatgtcatgtgtgaaactccttttattttataaattaatatcaaatatcaataacaaact |
19340320 |
T |
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| Q |
300 |
ttatcaaattctattactgttttgtgtcaaaaaggttaataatcaaatcaaatcaaat |
357 |
Q |
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| T |
19340319 |
ttatcaaattctattactgttttgtgtcaaaaaggttaataatcaaatcaaatcaaat |
19340262 |
T |
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Back To:
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Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 72 - 259
Target Start/End: Original strand, 13079546 - 13079736
Alignment:
| Q |
72 |
aatgaaaaagcactcagaaaa---taaaaagagattgattgattcattatatcgaaacaacaataacaaagggtaaaaaatattatgttacgtttggttt |
168 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13079546 |
aatgaaaaagcactcagaaaaaaataaaaagagattgattcattcattatatcgaaacaacaataacaaagggtaaaaaatattatgttatgtttggttt |
13079645 |
T |
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| Q |
169 |
tattgataattatttataatatatgatccaaatattgtggctatcatcatcttcaaaagttattatcgaatcatgtcatgtgtgaaactcc |
259 |
Q |
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| T |
13079646 |
tattgataattatttataatatatgatcctaatattgtggctatcatcatcttcaaaagttattatcgaatcatgtcatgtgtgaaactcc |
13079736 |
T |
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