View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11784_low_2 (Length: 740)
Name: NF11784_low_2
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 1 - 734
Target Start/End: Original strand, 10219068 - 10219806
Alignment:
| Q |
1 |
caatccaaatagggacttggttcttgattttatgttgttcaattgaatcattttccgttgaaagtgttggctatcttagtgagtaaggtccaatgcaggg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
10219068 |
caatccaaatagggacttggttcttgattttatgttgttcaattgaatcattttccgttgaaagtgttggctatcttagtgagtaaggtccaatgcaagg |
10219167 |
T |
|
| Q |
101 |
acaaggactgtccattttgcagtgataccaacaatagctgttattctgctaggtttggtttgcttagatggataataacagctctttgaatggtttatat |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| || |
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| T |
10219168 |
acaaggactgtccattttgcagtgataccaacaatagctgttattctgctaggttttgtttgcttagatggataataacagttctttgaatggtttacat |
10219267 |
T |
|
| Q |
201 |
gctaatggtttgaagttgttacgtctctcttatccataatattctgactgtgnnnnnnnnccgaaagagttaaatattgttatgtgattgtaatttacgt |
300 |
Q |
| |
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||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
10219268 |
gctaatgttttgaagttgttacgtctctcgtatccataatattctggctgtgttttttt-ccgaaagagttaaatattgttatgtgattgtaatttatgt |
10219366 |
T |
|
| Q |
301 |
cnnnnnnnngtactttccaggacccatttaccaaaccagatgagaagaagtttggagaccaacctgcaaccaagtagtaggaaagacgtcacagtggttt |
400 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10219367 |
cttttttttgtactttccaggacccatttaccaaaccagacgagaggaagtttggagaccaacctgcaaccaagtagtaggaaagacttcacagtggttt |
10219466 |
T |
|
| Q |
401 |
gtgttttgatgtaatctaaacaaatggtttatgagccttgtatgcctctttgcaagacatgcttgccagttaataaattatgaggggtcaaatgaagtct |
500 |
Q |
| |
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| T |
10219467 |
gtgttttgatgtaatctaaacaattggtttatgagccttgtatgcctctttgcaagacatgcttgccagttaataaattatgaggggtcaaatgaagtct |
10219566 |
T |
|
| Q |
501 |
agactctggagtatggaccctagtttagaactcacccacaaaagttctagagaactggttcacatatcagagatccttac---nnnnnnnnngtacaatt |
597 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10219567 |
agactctggagtatggaccctagtttagaacccacccacaaaagttctagagaactggttcacatatcagagatccttacttttttttttttgtacaatt |
10219666 |
T |
|
| Q |
598 |
gtcacat---ggaaatgtgtaataatcttccatttcatatcttttatccttatcaattttctgttaaaagtttgatttgcttttctgatttatttacgcc |
694 |
Q |
| |
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| T |
10219667 |
gtcacatggaggaaatgtgtaataatcttccatttcatatcttttatccttatcaattttctgttaaaagtttgctttgcttttctgatttatttacgcc |
10219766 |
T |
|
| Q |
695 |
aaagttcccacctttctctgcttagtgtttgtgttgattg |
734 |
Q |
| |
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| T |
10219767 |
aaagttcccacctttctctgcttagtgtttgtgttgattg |
10219806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 102 - 518
Target Start/End: Complemental strand, 53110842 - 53110433
Alignment:
| Q |
102 |
caaggactgtccattttgcagtgataccaacaatagctgttattctgctaggtttggtttgcttagatggataataacagctctttgaatggtttatatg |
201 |
Q |
| |
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|||||||| ||||||||||||| ||||| |||||| ||||||||||||||||| |||| |||||||| | |||||||| ||||||||||||||||||| |
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| T |
53110842 |
caaggactatccattttgcagtaatacctacaataactgttattctgctaggtgaggtta-cttagatgaacaataacagttctttgaatggtttatatg |
53110744 |
T |
|
| Q |
202 |
ctaatggtttgaagttgttacgtctctcttatccataatattctgactgtgnnnnnnnnccgaaagagttaaatattgttatgtgattgtaatttacgtc |
301 |
Q |
| |
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|||||| ||||||||||||| |||||| |||||| |||||| || || | || |||||||||||||| |||||||||||||||||||| |
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| T |
53110743 |
ctaatgttttgaagttgttatctctctcctatccacaatattttggttgcgtttttc--cctgaagagttaaatatt---atgtgattgtaatttacgtc |
53110649 |
T |
|
| Q |
302 |
nnnnnnnngtactttccaggacccatttaccaaaccagatgagaagaagtttggagaccaacctgcaaccaagtagtaggaaagacgtcacagtggtttg |
401 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||| |||||||| |||||||||||||||| |
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| T |
53110648 |
ttttatt-gtactttccaggacccatttaccaaaccagccgagaggaagtttggcgaccaacctgcaaccaagcagtaggaattacgtcacagtggtttg |
53110550 |
T |
|
| Q |
402 |
tgttttgatgtaatctaaacaaatggtttatgagccttgtatgcctctttgcaagacatgcttgccagttaataaattatgaggggtcaaatgaagtcta |
501 |
Q |
| |
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| ||||||||||||||| |||| || |||||||||| ||||| ||||||||||||||||| | || |||||||||||| |||| ||| ||||||||||| |
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| T |
53110549 |
tattttgatgtaatctatacaattgatttatgagccatgtatacctctttgcaagacatgttcgctagttaataaattccgaggtgtcgaatgaagtcta |
53110450 |
T |
|
| Q |
502 |
gactctggagtatggac |
518 |
Q |
| |
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||||||||||||||||| |
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| T |
53110449 |
gactctggagtatggac |
53110433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 53110965 - 53110921
Alignment:
| Q |
1 |
caatccaaatagggacttggttcttgattttatgttgttcaattg |
45 |
Q |
| |
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||||||||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
53110965 |
caatccaaatagggactcagttcttgattttatgctgttcaattg |
53110921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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