View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11784_low_22 (Length: 349)

Name: NF11784_low_22
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11784_low_22
NF11784_low_22
[»] chr1 (3 HSPs)
chr1 (162-333)||(37062998-37063167)
chr1 (69-137)||(37062910-37062978)
chr1 (22-72)||(37062827-37062877)


Alignment Details
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 162 - 333
Target Start/End: Original strand, 37062998 - 37063167
Alignment:
Q  162 tggggactaaccataaataacattgctataatggaatgagtnnnnnnnnnnnngtatattccgttgtttcttaacaaaactagagtgatgtgaagaggtt 261  Q
    |||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||    
T  37062998 tggggactaaccataaataacattgctataatggaatgagtcacacacaca--gtatattccgttgtttcttaacaaaactagagtgatgtgaagaggtt 37063095  T
Q  262 ttttgaacatagcgtaaaactagtttttctatgaccagcaattaatcaatcaatggggtgatggtgtatatg 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  37063096 ttttgaacatagcgtaaaactagtttttctatgaccagcaattaatcaatcaacggggtgattgtgtatatg 37063167  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 37062910 - 37062978
Alignment:
Q  69 aaaagacatatttttggtctattaggagcactcatttataatggaaacctcaataaaacctcgaacatg 137  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37062910 aaaagacatatgtttggtctattaggatcactcatttataatggaaacctcaataaaacctcgaacatg 37062978  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 37062827 - 37062877
Alignment:
Q  22 atgttatggtctatacttcattttcatcatttacttttgtttgcctaaaaa 72  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  37062827 atgttatggtctatacttccttttcatcatttacttttgtttgcgtaaaaa 37062877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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