View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11784_low_23 (Length: 340)
Name: NF11784_low_23
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 26629937 - 26629613
Alignment:
| Q |
1 |
tgtcaatccacgaaaacgcctatggtttagctcgttacgccgtcatatgtcaagagaatggtttggttccaattgtggagcctgagattctagtggatgg |
100 |
Q |
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| T |
26629937 |
tgtcaatccacgaaaacgcctatggtttagctcgttacgccgtcatatgtcaagagaatggtttggttccaattgtggagcctgagattctagtggatgg |
26629838 |
T |
|
| Q |
101 |
atcccacgacatcgcaaaatgcgctgatgtaaccgaacgcgttcttgcagcatgttacaaggctctaagtgaccatcatgttcttcttgaaggtactctt |
200 |
Q |
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| T |
26629837 |
accccacgacattgcaaagtgcgctgatgtaacagaacgcgttcttgcagcatgttacaaggctctaagtgaccatcatgttcttcttgaaggtactctt |
26629738 |
T |
|
| Q |
201 |
ttgaagcctaatatggttacaccaggatcagattctcctaaagttgctcctgaggttatagcccaacacaccgtccgagcattgttgagaaccgttcctg |
300 |
Q |
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| T |
26629737 |
ttgaagcctaatatggttacaccaggatcagattctcctaaagttgctcctgaggttatagcccaacacaccgtccgagcattgttgagaaccgttcctg |
26629638 |
T |
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| Q |
301 |
ccgcggttcctgctatagttttctt |
325 |
Q |
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| T |
26629637 |
ccgcggttcctgctatagttttctt |
26629613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 29237514 - 29237291
Alignment:
| Q |
6 |
atccacgaaaacgcctatggtttagctcgttacgccgtcatatgtcaagagaatggtttggttccaattgtggagcctgagattctagtggatggatccc |
105 |
Q |
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| T |
29237514 |
atccacgagaatgcctatggtttggcccgatatgcagtcatatgccaagagaatggacttgtaccaattgttgagcctgagatccttgttgatggacctc |
29237415 |
T |
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| Q |
106 |
acgacatcgcaaaatgcgctgatgtaaccgaacgcgttcttgcagcatgttacaaggctctaagtgaccatcatgttcttcttgaaggtactcttttgaa |
205 |
Q |
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| ||||| ||| || |||| ||| ||||| || ||||||||||| |||||||| | | |||||| ||||| || |||||||| ||||| ||||| |
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| T |
29237414 |
atgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgctacaaggccttgaatgaccaccatgtcctccttgaaggcactctcttgaa |
29237315 |
T |
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| Q |
206 |
gcctaatatggttacaccaggatc |
229 |
Q |
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|||||| |||||||| || ||||| |
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| T |
29237314 |
gcctaacatggttacccctggatc |
29237291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 29233764 - 29233541
Alignment:
| Q |
6 |
atccacgaaaacgcctatggtttagctcgttacgccgtcatatgtcaagagaatggtttggttccaattgtggagcctgagattctagtggatggatccc |
105 |
Q |
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|||||||| || ||||||||||| || || || || |||||||| ||||||||||| | || |||||||| ||||||||||| || || |||||| | | |
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| T |
29233764 |
atccacgagaatgcctatggtttggcccgatatgcagtcatatgccaagagaatggacttgtaccaattgttgagcctgagatccttgttgatggacctc |
29233665 |
T |
|
| Q |
106 |
acgacatcgcaaaatgcgctgatgtaaccgaacgcgttcttgcagcatgttacaaggctcta-agtgaccatcatgttcttcttgaaggtactcttttga |
204 |
Q |
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| ||||| ||| || |||| ||| ||||| || ||||||||||| |||||||| ||| | |||||| ||||| || |||||||| ||||| |||| |
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| T |
29233664 |
atgacattcaaaagtgtgctgctgttaccgagaaggtccttgcagcatgctacaaggc-ctagaatgaccaccatgtcctccttgaaggcactctcttga |
29233566 |
T |
|
| Q |
205 |
agcctaatatggttacaccaggatc |
229 |
Q |
| |
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||||||| |||||||| || ||||| |
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| T |
29233565 |
agcctaacatggttacccctggatc |
29233541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 42280424 - 42280620
Alignment:
| Q |
30 |
gctcgttacgccgtcatatgtcaagagaatggtttggttccaattgtggagcctgagattctagtggatggatcccacgacatcgcaaaatgcgctgatg |
129 |
Q |
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||||| |||||| |||| || || |||||||| | || || ||||| |||||||||||| || |||||||| || |||||||| |||||||| | || |
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| T |
42280424 |
gctcgctacgccatcatttgccaggagaatggccttgtgcctattgttgagcctgagattttaaccgatggatctcatgacatcgccaaatgcgccgctg |
42280523 |
T |
|
| Q |
130 |
taaccgaacgcgttcttgcagcatgttacaaggctctaagtgaccatcatgttcttcttgaaggtactcttttgaagcctaatatggttacaccagg |
226 |
Q |
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| T |
42280524 |
tcactgaaactgtacttgcagctgtttacaaggcactgaatgatcagcatgtccttcttgaaggaactcttctcaagcctaacatggttaccccagg |
42280620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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