View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11784_low_24 (Length: 327)
Name: NF11784_low_24
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_low_24 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 317
Target Start/End: Original strand, 6249244 - 6249542
Alignment:
| Q |
19 |
ctactcgatatgtacaacaaagaagaagaaaccaaacaatttatgatttcttctgtccggatcttccaaaaagtgttaccttcaattcaataaaaattag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6249244 |
ctactcgatatgtacaacaaagaagaagaaaccaaacaattcatgatttcttatgtccggatcttccaaaaagtgttaccttcacttcaataaaaattag |
6249343 |
T |
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| Q |
119 |
agttgctggaaaaatcactgaaggtttctctgcatctgacccgcgttaacccaacccgtgaaccgtacgacccgtaacccgctgaacccgcaacaaaaaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249344 |
agttgctggaaaaatcactgaaggtttctctgcatctaacccgcgttaacccaacccgtgaaccgtacgacccgtaacccgctgaacccgcaacaaaaaa |
6249443 |
T |
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| Q |
219 |
ggggttgaaatgggcttctgtaggacacccgcgggttgggcagggttggtgttttgagcccgaacccgcccgacgcccacccctagacacatccctttg |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6249444 |
ggggttgaaatgggcttctgtaggacacccgcgggttgggcagggttggtgttttgagcccgaacccgcccgacgcccacccctagacacatccctttg |
6249542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 43064364 - 43064315
Alignment:
| Q |
242 |
gacacccgcgggttgggcagggttggtgttttgagcccgaacccgcccga |
291 |
Q |
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| T |
43064364 |
gacacccgcgagttgggctggattggggttttgggcccgaacccgcccga |
43064315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 43047400 - 43047684
Alignment:
| Q |
19 |
ctactcgatatgtacaacaaagaagaagaaaccaaacaatttatgatttcttctgtccggatcttccaaaaagtgttaccttcaattcaataaaaattag |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43047400 |
ctactcgatatgtacaacaaagaagaagaaaccaaacaattcatgatttcttctgtccggatcttccaaaaagtgttaccttcacttcaataaaaattag |
43047499 |
T |
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| Q |
119 |
agttgctggaaaaatcactgaaggtttctctgcatctgacccgcgttaacccaacccgtgaaccgtacgacccgtaacccgctgaacccgcaacaaaaaa |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43047500 |
agttgctggaaaaatcaccgaaggtttctctgcatctgacccgcgttaacccaacccgtgaaccgtacgacccgtaacccgctggacccgcaacaaaaaa |
43047599 |
T |
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| Q |
219 |
ggggttgaaatgggcttctgtaggacacccgcgggttgggcagggttggtgttttgagcccgaacccgcccgacgcccaccccta |
303 |
Q |
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| T |
43047600 |
ggggttgaaatgggcttatgtaggacacccgcgggttgggctaggttggtgttttgagcccgaacccgcccgacgcccaccccta |
43047684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 41120828 - 41120884
Alignment:
| Q |
247 |
ccgcgggttgggcagggttggtgttttgagcccgaacccgcccgacgcccaccccta |
303 |
Q |
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| T |
41120828 |
ccgcgggttgggctgggtgggtgctttggacccgaacccgcccgatgtccaccccta |
41120884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 102321 - 102265
Alignment:
| Q |
247 |
ccgcgggttgggcagggttggtgttttgagcccgaacccgcccgacgcccaccccta |
303 |
Q |
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| T |
102321 |
ccgcgggttgggctgggtgggtgctttggacccgaacccgcccgatgtccaccccta |
102265 |
T |
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