View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11784_low_28 (Length: 278)

Name: NF11784_low_28
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11784_low_28
NF11784_low_28
[»] chr4 (4 HSPs)
chr4 (14-265)||(9905546-9905797)
chr4 (20-90)||(4651150-4651219)
chr4 (45-90)||(12115946-12115991)
chr4 (36-88)||(6017186-6017238)
[»] chr7 (2 HSPs)
chr7 (36-86)||(3355917-3355967)
chr7 (45-117)||(7802683-7802755)
[»] chr5 (2 HSPs)
chr5 (49-90)||(38386579-38386620)
chr5 (45-85)||(9738477-9738517)
[»] chr2 (4 HSPs)
chr2 (45-102)||(39926327-39926384)
chr2 (35-88)||(4570476-4570529)
chr2 (35-88)||(42152521-42152574)
chr2 (36-88)||(34756800-34756852)
[»] chr6 (1 HSPs)
chr6 (53-101)||(11761425-11761473)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 9905797 - 9905546
Alignment:
Q  14 ttcacttttcttgcggattcttctttcctatggatcttaaaattctaaggaaacaattacctacaaaggtattacctaagaacctaaattccaggtaaaa 113  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| ||||||| ||||||||| || ||||    
T  9905797 ttcacttttcttgcggattcttcttttctatggatcttaaaatcctaaggaaacaattacccacaaaggtattatctaagaatctaaattcctggcaaaa 9905698  T
Q  114 tccgaatgaaacgtgtttcctaaggaaaattcattaatttcggaagaaaaatcgagagtttctagtagtgaaatctcggagataaaaaatagcatcgtta 213  Q
    | ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9905697 ttcgaatgaaatgtgtttcctaaggaaaattcattaattttggaagaaaaatcgagagtttctagtagtgaaatctcggagataaaaaatagcatcgtta 9905598  T
Q  214 tgaaaaaatgaaggatattaactcataccaatttcatatcaactcaaattct 265  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9905597 tgaaaaaatgaagaatattaactcataccaatttcatatcaactcaaattct 9905546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 90
Target Start/End: Complemental strand, 4651219 - 4651150
Alignment:
Q  20 tttcttgcggattcttctttcctatggatcttaaaattctaaggaaacaattacctacaaaggtattacct 90  Q
    |||| ||||||| || |||||||  ||||||||||||  |||||||||||||||| || ||||||||||||    
T  4651219 tttcctgcggatactcctttcctgcggatcttaaaatcttaaggaaacaattacc-acgaaggtattacct 4651150  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 12115946 - 12115991
Alignment:
Q  45 ggatcttaaaattctaaggaaacaattacctacaaaggtattacct 90  Q
    ||||| |||||||||||||||||||||||| || ||||| ||||||    
T  12115946 ggatcctaaaattctaaggaaacaattacccacgaaggtgttacct 12115991  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 6017238 - 6017186
Alignment:
Q  36 ctttcctatggatcttaaaattctaaggaaacaattacctacaaaggtattac 88  Q
    |||||||| ||||| ||||||  |||||||||||||||| || ||||||||||    
T  6017238 ctttcctacggatcctaaaatcataaggaaacaattacccacgaaggtattac 6017186  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 3355967 - 3355917
Alignment:
Q  36 ctttcctatggatcttaaaattctaaggaaacaattacctacaaaggtatt 86  Q
    |||||||  ||||| |||||| |||||||||||||||||||||||||||||    
T  3355967 ctttcctgcggatcctaaaatcctaaggaaacaattacctacaaaggtatt 3355917  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 117
Target Start/End: Complemental strand, 7802755 - 7802683
Alignment:
Q  45 ggatcttaaaattctaaggaaacaattacctacaaaggtattacctaagaacctaaattccaggtaaaatccg 117  Q
    ||||| |||||| ||||||||||||||||| ||||||| |||| ||  |||||| ||| | ||| ||||||||    
T  7802755 ggatcctaaaatcctaaggaaacaattacccacaaagggattaactgggaacctcaatcctaggcaaaatccg 7802683  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 38386620 - 38386579
Alignment:
Q  49 cttaaaattctaaggaaacaattacctacaaaggtattacct 90  Q
    ||||||||||||||||||||||||||| | ||||||||||||    
T  38386620 cttaaaattctaaggaaacaattaccttcgaaggtattacct 38386579  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 9738517 - 9738477
Alignment:
Q  45 ggatcttaaaattctaaggaaacaattacctacaaaggtat 85  Q
    ||||| |||||| |||||||||||||||||||| |||||||    
T  9738517 ggatcctaaaatcctaaggaaacaattacctacgaaggtat 9738477  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 39926327 - 39926384
Alignment:
Q  45 ggatcttaaaattctaaggaaacaattacctacaaaggtattacctaagaacctaaat 102  Q
    ||||| ||||||||||| ||||| |||||| ||||||||||||||| |||||| ||||    
T  39926327 ggatcctaaaattctaatgaaacgattacccacaaaggtattacctgagaaccaaaat 39926384  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 4570476 - 4570529
Alignment:
Q  35 tctttcctatggatcttaaaattctaaggaaacaattacctacaaaggtattac 88  Q
    ||||| || |||||| ||||||  ||||||||||||||||||| ||||||||||    
T  4570476 tcttttctgtggatcctaaaatcttaaggaaacaattacctacgaaggtattac 4570529  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 42152521 - 42152574
Alignment:
Q  35 tctttcctatggatcttaaaattctaaggaaacaattacctacaaaggtattac 88  Q
    ||||||||| ||||| |||||| ||||||||||||||||| || ||| ||||||    
T  42152521 tctttcctacggatcctaaaatcctaaggaaacaattacccacgaagatattac 42152574  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 34756852 - 34756800
Alignment:
Q  36 ctttcctatggatcttaaaattctaaggaaacaattacctacaaaggtattac 88  Q
    |||||||  ||||| |||||| ||||||||||||||||| || ||||||||||    
T  34756852 ctttcctgcggatcctaaaatcctaaggaaacaattacccacgaaggtattac 34756800  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Original strand, 11761425 - 11761473
Alignment:
Q  53 aaattctaaggaaacaattacctacaaaggtattacctaagaacctaaa 101  Q
    |||| ||||||||||||||||| || ||||||||||||| |||||||||    
T  11761425 aaatcctaaggaaacaattacccacgaaggtattacctaggaacctaaa 11761473  T

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