View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11784_low_3 (Length: 724)

Name: NF11784_low_3
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11784_low_3
NF11784_low_3
[»] chr5 (5 HSPs)
chr5 (290-713)||(7141572-7141992)
chr5 (351-694)||(7154361-7154704)
chr5 (351-711)||(7131850-7132210)
chr5 (507-652)||(41305312-41305457)
chr5 (510-571)||(31177694-31177755)
[»] chr3 (1 HSPs)
chr3 (510-652)||(22986265-22986407)
[»] chr8 (1 HSPs)
chr8 (492-655)||(23610187-23610350)
[»] chr6 (2 HSPs)
chr6 (575-654)||(12425274-12425353)
chr6 (577-654)||(12268332-12268409)
[»] chr4 (1 HSPs)
chr4 (575-654)||(55954947-55955026)
[»] chr2 (1 HSPs)
chr2 (609-654)||(41795747-41795792)


Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 290 - 713
Target Start/End: Complemental strand, 7141992 - 7141572
Alignment:
Q  290 acataattgaattcaaaagacacatatacgagtatcatggagttagacatcatatattgttggaatcaaacacaactcatttttccttccaactgttagt 389  Q
    |||||||||||||||||| |||    || ||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||    
T  7141992 acataattgaattcaaaatacat---tatgagtatcatggagttagacatcataaacagttggaatcaaacacaactcatttttccttccaactgttagt 7141896  T
Q  390 ccaaaatcttctatcatatccaaatcctgagacttcatctgatttgggagttcccagttaaagtgatagagcaatagagccaaaggaaatataacacttg 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141895 ccaaaatcttctatcatatccaaatcctgagacttcatctgatttgggagttcccagttaaagtgatagagcaatagagccaaaggaaatataacacttg 7141796  T
Q  490 ctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacct 589  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141795 ctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacct 7141696  T
Q  590 ctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttataaagactgtagtattttttggtatatcataccca 689  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7141695 ctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtattttttggtatatcataccca 7141596  T
Q  690 tctattttggttagttctgtgctc 713  Q
    ||||||||||||||||||||||||    
T  7141595 tctattttggttagttctgtgctc 7141572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 351 - 694
Target Start/End: Complemental strand, 7154704 - 7154361
Alignment:
Q  351 ggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatctgatttgggagttcccagttaa 450  Q
    |||||||||||||||||||||| |||||||||||  | ||||| || |||  ||||||||||||||| ||  |||||||||||||| |||||||| ||||    
T  7154704 ggaatcaaacacaactcattttcccttccaactgccaatccaacattttcagtcatatccaaatcctcaggtttcatctgatttggtagttcccaattaa 7154605  T
Q  451 agtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaa 550  Q
    | ||||| || |||| ||| | |||||  |||||||| |||| |||||| | ||| || ||||||||||| |||||||| || |||||||| ||||| ||    
T  7154604 aatgatatagtaataaagcaagaggaagcataacactagctataccaaatgacatgcctggacacattcttcttccagcaccaaaaggaatatactcaaa 7154505  T
Q  551 gttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgca 650  Q
     ||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||  ||||||||| | | ||||||||||    
T  7154504 attatttcctttgaaatcaatcaaactaccatcaaacctctctggaatgaacatctcagcatcagtccaatattgtggatctcttgccactgcccatgca 7154405  T
Q  651 tttataaagactgtagtattttttggtatatcatacccatctat 694  Q
    ||||| |  ||| |||||||||||||||| ||||| ||||||||    
T  7154404 tttatcatcactttagtattttttggtatttcataaccatctat 7154361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 351 - 711
Target Start/End: Complemental strand, 7132210 - 7131850
Alignment:
Q  351 ggaatcaaacacaactcatttttccttccaactgttagtccaaaatcttctatcatatccaaatcctgagacttcatctgatttgggagttcccagttaa 450  Q
    |||||||||||||| ||| ||||| ||||||  |  | |||| ||| |||  ||||||||||||||  ||  ||||||| ||| || |||||||| ||||    
T  7132210 ggaatcaaacacaaatcacttttctttccaatagccaatccataatgttcagtcatatccaaatccataggtttcatcttattaggaagttcccaattaa 7132111  T
Q  451 agtgatagagcaatagagccaaaggaaatataacacttgctaaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaa 550  Q
    | ||||| || |||| ||||| |||||  |||| ||  |||| ||||||   ||  || || || ||||| || || ||||| |||||||  || || ||    
T  7132110 aatgataaagtaataaagccacaggaagcataataccagctataccaaattgcaagccagggcaaattcttctacctgctccaaaaggaagatattcaaa 7132011  T
Q  551 gttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgca 650  Q
     ||||| ||| | ||||||||  ||||| | ||||| ||||||||| ||||| ||||||||||| ||||||||| |||||| ||| | || |||||| ||    
T  7132010 attattccctctaaaatcaatagaactaccttcaaatctctctggattaaacatctcagcatcagtccaatattgaggatcccttgccatagcccataca 7131911  T
Q  651 tttataaagactgtagtattttttggtatatcatacccatctattttggttagttctgtgc 711  Q
    || || | |||| |||| ||||||||||||||||| ||||| || ||||||| ||| ||||    
T  7131910 ttaatcatgactttagtcttttttggtatatcataaccatcaatgttggttaattcagtgc 7131850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 507 - 652
Target Start/End: Complemental strand, 41305457 - 41305312
Alignment:
Q  507 cccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctct 606  Q
    ||||||||||| ||||||||||| || || || ||||| || ||||   | ||||||||||||||  | |||| | |||||||||| ||  |||| ||||    
T  41305457 cccggacacatcctccttccagcaccaaatggtatgtattcaaagtctgtgcctttgaaatcaattgagctattaacaaacctctcgggtttaaaactct 41305358  T
Q  607 cagcatcattccaatatttaggatctcttcctattgcccatgcatt 652  Q
    |||| |||  |||||| || ||||||||||| || ||||| |||||    
T  41305357 cagcttcaacccaatactttggatctcttccaatcgcccaagcatt 41305312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 510 - 571
Target Start/End: Original strand, 31177694 - 31177755
Alignment:
Q  510 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaat 571  Q
    ||||||||||| |||||||| ||||| || |||||||| |||||  | ||||||||||||||    
T  31177694 ggacacattcttcttccagcaccgaacggtatgtactcaaagtttgtacctttgaaatcaat 31177755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 510 - 652
Target Start/End: Original strand, 22986265 - 22986407
Alignment:
Q  510 ggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctctctggaataaacctctcag 609  Q
    ||||| |||||||||||||| || || ||||||||||| || ||| ||||||||||||||||  ||||||||  ||||||||| |||  |||| | || |    
T  22986265 ggacaaattctccttccagcaccaaatggaatgtactcaaaattagttcctttgaaatcaatagaactatcaataaacctctcaggataaaacttatcgg 22986364  T
Q  610 catcattccaatatttaggatctcttcctattgcccatgcatt 652  Q
      |||||||||||||||||||| | ||| || ||||| |||||    
T  22986365 ggtcattccaatatttaggatcccgtccaatggcccaagcatt 22986407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 492 - 655
Target Start/End: Original strand, 23610187 - 23610350
Alignment:
Q  492 aaaccaaaggtcatacccggacacattctccttccagctccgaaaggaatgtactcgaagttatttcctttgaaatcaatcaaactatcatcaaacctct 591  Q
    |||||| || |||| || ||||| |||||||| ||||| || || |||||| |||| || ||| |||||  |||||||||  | ||||||  |||||| |    
T  23610187 aaaccatagttcatgccgggacaaattctcctaccagcaccaaatggaatgaactcaaaattagttcctgagaaatcaatagagctatcaataaaccttt 23610286  T
Q  592 ctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcatttat 655  Q
    | |||  |||| | || |  |||||||||||||||||||| |||||||||||||| ||||||||    
T  23610287 caggataaaacttatctgggtcattccaatatttaggatcccttcctattgcccaagcatttat 23610350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 575 - 654
Target Start/End: Original strand, 12425274 - 12425353
Alignment:
Q  575 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 654  Q
    |||||||| ||||||||| || |||||| |||||||||||  ||||| ||  ||||||||||| ||||||||||||||||    
T  12425274 actatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcattta 12425353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 654
Target Start/End: Complemental strand, 12268409 - 12268332
Alignment:
Q  577 tatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 654  Q
    |||||| ||||||||| || |||||| |||| ||||||  |||||  || ||||||||||| ||||||||||||||||    
T  12268409 tatcatgaaacctctcaggtataaacttctctgcatcagaccaatgattgggatctcttccaattgcccatgcattta 12268332  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 575 - 654
Target Start/End: Original strand, 55954947 - 55955026
Alignment:
Q  575 actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccatgcattta 654  Q
    |||||||| |||||| || || |||||| |||  ||||||| ||||| ||| ||||||||||| ||||||||||||||||    
T  55954947 actatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcattta 55955026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 609 - 654
Target Start/End: Original strand, 41795747 - 41795792
Alignment:
Q  609 gcatcattccaatatttaggatctcttcctattgcccatgcattta 654  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||    
T  41795747 gcatcatatcaatatttgggatctcttccgattgcccatgcattta 41795792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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