View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11784_low_36 (Length: 226)

Name: NF11784_low_36
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11784_low_36
NF11784_low_36
[»] chr5 (6 HSPs)
chr5 (1-221)||(5435138-5435338)
chr5 (1-221)||(5448958-5449158)
chr5 (96-188)||(7254570-7254661)
chr5 (96-188)||(7262012-7262103)
chr5 (99-148)||(7786938-7786986)
chr5 (99-148)||(7794788-7794836)
[»] chr6 (3 HSPs)
chr6 (87-221)||(22632157-22632290)
chr6 (114-181)||(22060208-22060274)
chr6 (37-71)||(22632286-22632320)
[»] chr3 (10 HSPs)
chr3 (88-211)||(46392880-46393002)
chr3 (88-211)||(46400628-46400750)
chr3 (114-181)||(15610014-15610080)
chr3 (114-181)||(15578970-15579036)
chr3 (114-181)||(15909598-15909664)
chr3 (114-181)||(15923767-15923833)
chr3 (114-148)||(15528602-15528636)
chr3 (114-148)||(15537292-15537326)
chr3 (99-148)||(6194482-6194530)
chr3 (99-148)||(6202065-6202113)
[»] chr2 (6 HSPs)
chr2 (93-211)||(39650095-39650213)
chr2 (114-181)||(44370764-44370830)
chr2 (96-148)||(22934751-22934802)
chr2 (96-148)||(22954609-22954660)
chr2 (92-127)||(21065200-21065235)
chr2 (96-148)||(22940714-22940765)
[»] chr8 (4 HSPs)
chr8 (111-181)||(15449791-15449860)
chr8 (96-148)||(39631035-39631086)
chr8 (96-148)||(39640583-39640634)
chr8 (87-127)||(6031349-6031389)
[»] scaffold0182 (1 HSPs)
scaffold0182 (93-181)||(5733-5821)
[»] chr1 (3 HSPs)
chr1 (93-140)||(20979514-20979560)
chr1 (91-127)||(6197399-6197435)
chr1 (91-127)||(6205250-6205286)
[»] scaffold0076 (1 HSPs)
scaffold0076 (97-181)||(60810-60896)
[»] scaffold0075 (1 HSPs)
scaffold0075 (87-127)||(56569-56609)
[»] chr4 (1 HSPs)
chr4 (87-127)||(16871-16911)
[»] scaffold0431 (1 HSPs)
scaffold0431 (93-148)||(2269-2323)
[»] chr7 (2 HSPs)
chr7 (114-148)||(42017373-42017407)
chr7 (92-148)||(5651050-5651106)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5435138 - 5435338
Alignment:
Q  1 tctctggctttctctgtgtgttgctcttgcttctgcgtttttccgtgttctgctgtgtgattcagtgtgttctgctgtgcgatgccgtgtcgttcttgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |           | ||        |||| |||||||||    
T  5435138 tctctggctttctctgtgtgttgctcttgcttctgcgtttttccgtgttctgctgtgtgatcc-----------ccgt--------gtgttgttcttgtg 5435218  T
Q  101 ttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggatttggatgaaaga 200  Q
    |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5435219 ttgtgcagggctctatttatagag-tgaggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggatttggatgaaaga 5435317  T
Q  201 tggagacgcgtctgtgctcct 221  Q
    ||||||||||| |||| ||||    
T  5435318 tggagacgcgtttgtgttcct 5435338  T

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Target: chr5; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5448958 - 5449158
Alignment:
Q  1 tctctggctttctctgtgtgttgctcttgcttctgcgtttttccgtgttctgctgtgtgattcagtgtgttctgctgtgcgatgccgtgtcgttcttgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |           | |||        ||| |||||||||    
T  5448958 tctctggctttctctgtgtgttgctcttgcttctgcgtttttccgtgttctactgtgtgatcc-----------ccgtg--------tgttgttcttgtg 5449038  T
Q  101 ttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggatttggatgaaaga 200  Q
    |||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5449039 ttgtgcagggctctatttatagag-tgaggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggatttggatgaaaga 5449137  T
Q  201 tggagacgcgtctgtgctcct 221  Q
    ||||||||||| |||| ||||    
T  5449138 tggagacgcgtttgtgttcct 5449158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 7254570 - 7254661
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggat 188  Q
    |||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7254570 ttgtgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggat 7254661  T

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Target: chr5; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 188
Target Start/End: Original strand, 7262012 - 7262103
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggat 188  Q
    |||||||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7262012 ttgtgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggat 7262103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 7786986 - 7786938
Alignment:
Q  99 tgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    ||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  7786986 tgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtt 7786938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 7794836 - 7794788
Alignment:
Q  99 tgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    ||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  7794836 tgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtt 7794788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 22632290 - 22632157
Alignment:
Q  87 gtgtcgttcttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcgg 186  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22632290 gtgttgttcttgtgttgtgcagggctctatttatagtgctggg-ttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcgg 22632192  T
Q  187 atttggatgaaagatggagacgcgtctgtgctcct 221  Q
    ||||||||||||||||||||||||| |||| ||||    
T  22632191 atttggatgaaagatggagacgcgtttgtgttcct 22632157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 22060274 - 22060208
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||||||| ||||| | |||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  22060274 tatttatagtactgggct-gaggctagggtttgttaaaattccgcagaaattaggtgatcgggatgga 22060208  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 22632320 - 22632286
Alignment:
Q  37 gtttttccgtgttctgctgtgtgattcagtgtgtt 71  Q
    ||||||||||||||||||||||||| |||||||||    
T  22632320 gtttttccgtgttctgctgtgtgatccagtgtgtt 22632286  T

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Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 46392880 - 46393002
Alignment:
Q  88 tgtcgttcttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcgga 187  Q
    |||| ||||||||||||||||| |||| |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46392880 tgtctttcttgtgttgtgcaggtctctttttatagtgctgggct-gaggttagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcgga 46392978  T
Q  188 tttggatgaaagatggagacgcgt 211  Q
    ||||||||||||||||||||||||    
T  46392979 tttggatgaaagatggagacgcgt 46393002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 46400628 - 46400750
Alignment:
Q  88 tgtcgttcttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcgga 187  Q
    |||| ||||||||||||||||| |||| |||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46400628 tgtctttcttgtgttgtgcaggtctctttttatagtgctgggct-gaggttagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcgga 46400726  T
Q  188 tttggatgaaagatggagacgcgt 211  Q
    ||||||||||||||||||||||||    
T  46400727 tttggatgaaagatggagacgcgt 46400750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 15610014 - 15610080
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15610014 tatttatagtgctgggct-gaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 15610080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 15578970 - 15579036
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  15578970 tatttatagtgctgggct-gaggctagggtttgtttaaaatccgcagaaattaggtgatcgggatgga 15579036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 15909664 - 15909598
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15909664 tatttatattgctgggct-gaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 15909598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 15923833 - 15923767
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15923833 tatttatagtgctgggct-gaggctagggtttgtttaaaatccacagaaattaggtgattgggatgga 15923767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 15528602 - 15528636
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||||| ||||||||||||||||||    
T  15528602 tatttatagtgctgggtttgaggctagggtttgtt 15528636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 15537292 - 15537326
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||||| ||||||||||||||||||    
T  15537292 tatttatagtgctgggtttgaggctagggtttgtt 15537326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 6194530 - 6194482
Alignment:
Q  99 tgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    ||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  6194530 tgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtt 6194482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 6202113 - 6202065
Alignment:
Q  99 tgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    ||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  6202113 tgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtt 6202065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 39650213 - 39650095
Alignment:
Q  93 ttcttgtgttgtgcaggg-ctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatggaatcggatttg 191  Q
    |||||||||||||||||  || |||||||||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  39650213 ttcttgtgttgtgcaggctctatatttatagtgctgggct-gaggctagggtttgttaaaaatccgcagaatttaggtgattgggatggaatcggatttg 39650115  T
Q  192 gatgaaagatggagacgcgt 211  Q
    ||||||||||||||||||||    
T  39650114 gatgaaagatggagacgcgt 39650095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 44370830 - 44370764
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||||||| ||||| | |||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  44370830 tatttatagtactgggct-gaggctagggtttgttaaaattccgcagaaattaggtgatcgggatgga 44370764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 22934802 - 22934751
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  22934802 ttgtgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtt 22934751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 22954660 - 22954609
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||| |||||||||||| | || ||||||||||||||||||||    
T  22954660 ttgtgttgtgcaggtctctatttatagag-tgaggttgaggctagggtttgtt 22954609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 21065235 - 21065200
Alignment:
Q  92 gttcttgtgttgtgcagggctctatttatagtgctg 127  Q
    |||||||||||||||||| |||||||||||||||||    
T  21065235 gttcttgtgttgtgcaggtctctatttatagtgctg 21065200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 22940765 - 22940714
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||| |||||||||||| | || ||||||||| ||||||||||    
T  22940765 ttgtgttgtgcaggtctctatttatagag-tgaggttgaggccagggtttgtt 22940714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 15449791 - 15449860
Alignment:
Q  111 ctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15449791 ctctatttatagtgctgggct-gaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 15449860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 39631035 - 39631086
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  39631035 ttgtgttgtgcaggtctctatttatagtgct-gggctgaggctagggtttgtt 39631086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 39640583 - 39640634
Alignment:
Q  96 ttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  39640583 ttgtgttgtgcaggtctctatttatagtgct-gggctgaggctagggtttgtt 39640634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 6031389 - 6031349
Alignment:
Q  87 gtgtcgttcttgtgttgtgcagggctctatttatagtgctg 127  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  6031389 gtgttgttcttgtgttgtgcaggtctctatttatagtgctg 6031349  T

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Target: scaffold0182 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 93 - 181
Target Start/End: Complemental strand, 5821 - 5733
Alignment:
Q  93 ttcttgtgttgtgcaggg-ctctatttatagtgctggggttgaggctagggtttgtttaaaatccgcagaaattaggtgattgggatgga 181  Q
    |||||| ||||||||||  || |||||||||||||||| | |||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  5821 ttcttgcgttgtgcaggctctatatttatagtgctgggct-gaggctagggtttgttaaaaatccgcagaatttaggtgattgggatgga 5733  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 20979514 - 20979560
Alignment:
Q  93 ttcttgtgttgtgcagggctctatttatagtgctggggttgaggctag 140  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||    
T  20979514 ttcttgtgttgtgcaggactctatttatagtgct-gggttgaggctag 20979560  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 6197399 - 6197435
Alignment:
Q  91 cgttcttgtgttgtgcagggctctatttatagtgctg 127  Q
    ||||||||||||||||||| |||||||||||||||||    
T  6197399 cgttcttgtgttgtgcaggtctctatttatagtgctg 6197435  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 127
Target Start/End: Original strand, 6205250 - 6205286
Alignment:
Q  91 cgttcttgtgttgtgcagggctctatttatagtgctg 127  Q
    ||||||||||||||||||| |||||||||||||||||    
T  6205250 cgttcttgtgttgtgcaggtctctatttatagtgctg 6205286  T

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Target: scaffold0076 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 60896 - 60810
Alignment:
Q  97 tgtgttgtgcagggctctatttatagtgctggggttgaggct--agggtttgtttaaaa-tccgcagaaattaggtgattgggatgga 181  Q
    |||||||||||||    |||||||||||||||| ||||| ||  |||||||||| |||| ||| ||||||||||||||||||||||||    
T  60896 tgtgttgtgcaggttgttatttatagtgctggg-ttgagactttagggtttgttaaaaagtccacagaaattaggtgattgggatgga 60810  T

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Target: scaffold0075 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 56609 - 56569
Alignment:
Q  87 gtgtcgttcttgtgttgtgcagggctctatttatagtgctg 127  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  56609 gtgttgttcttgtgttgtgcaggtctctatttatagtgctg 56569  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 16911 - 16871
Alignment:
Q  87 gtgtcgttcttgtgttgtgcagggctctatttatagtgctg 127  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  16911 gtgttgttcttgtgttgtgcaggtctctatttatagtgctg 16871  T

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Target: scaffold0431 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 2269 - 2323
Alignment:
Q  93 ttcttgtgttgtgcagggctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    ||||||||||||||||| ||||||||||||  || |||||| ||||||||||||||    
T  2269 ttcttgtgttgtgcaggtctctatttatagcact-gggttggggctagggtttgtt 2323  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 148
Target Start/End: Original strand, 42017373 - 42017407
Alignment:
Q  114 tatttatagtgctggggttgaggctagggtttgtt 148  Q
    |||||||||||||||| ||||||||||||||||||    
T  42017373 tatttatagtgctgggtttgaggctagggtttgtt 42017407  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 5651050 - 5651106
Alignment:
Q  92 gttcttgtgttgtgcagg-gctctatttatagtgctggggttgaggctagggtttgtt 148  Q
    ||||||||||||||||||  || ||||||||||||| ||| |||||||||||||||||    
T  5651050 gttcttgtgttgtgcaggctctatatttatagtgct-gggctgaggctagggtttgtt 5651106  T

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