View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11784_low_38 (Length: 213)
Name: NF11784_low_38
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 38904458 - 38904580
Alignment:
| Q |
87 |
atctgaacaccaaactaaacccattgagttctcat----------atcatgtaatttgacttgaaagcaacaaacacgacattgaaagtatcgaaatgga |
176 |
Q |
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| T |
38904458 |
atctgagcaccaaactaaacccattgagttctcatatcatatcatatcatgtaatttgacttgaaagcaacaaacacgacattgaaagtatcgaaatgga |
38904557 |
T |
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| Q |
177 |
gaaaaacgaagaaaatcctctct |
199 |
Q |
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| T |
38904558 |
gaaaaacgaagaaaatcctctct |
38904580 |
T |
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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 38904347 - 38904416
Alignment:
| Q |
15 |
aattagagagtgttctacaaaaatttaaagattaatttggtttagtctaaaatatttattctccgacctc |
84 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38904347 |
aattagagagtgttctacaaaaatttaaagattaatttggtttagtctaaaatatttattctccgacctc |
38904416 |
T |
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