View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11784_low_39 (Length: 205)
Name: NF11784_low_39
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 5435015 - 5435083
Alignment:
| Q |
27 |
cggcttgattcgtactctgtatggatcggttctgttgttgttgtgtccttgcggttggatctgttgttg |
95 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5435015 |
cggcttgattcgtactctgtatggatcggttctgttgttgttgtgtccttgcggttggatctgttgttg |
5435083 |
T |
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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 5448835 - 5448903
Alignment:
| Q |
27 |
cggcttgattcgtactctgtatggatcggttctgttgttgttgtgtccttgcggttggatctgttgttg |
95 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5448835 |
cggcttgattcgtactctgtatggatcggttctgttgttgttgtgtccttgcggttggatctgttgttg |
5448903 |
T |
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