View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11784_low_6 (Length: 596)
Name: NF11784_low_6
Description: NF11784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11784_low_6 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 517; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 5 - 580
Target Start/End: Complemental strand, 15017326 - 15016750
Alignment:
| Q |
5 |
attaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatata |
104 |
Q |
| |
|
||||||||||||||| ||||||||| ||| ||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| | |
|
|
| T |
15017326 |
attaccacacaagcccttgttatttgtcaatgcttcaattggagctcttccgaaagctgtaatgtttggagtcggaccctccaactggttgtaagataca |
15017227 |
T |
|
| Q |
105 |
tcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15017226 |
tcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggc |
15017127 |
T |
|
| Q |
205 |
caagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccctcaaa |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15017126 |
caagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaactcaacaggaatgttcccctcaaa |
15017027 |
T |
|
| Q |
304 |
cttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagtt |
403 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15017026 |
cttattttggctcaaatttaacttcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgctgcaagctccaatgcagtt |
15016927 |
T |
|
| Q |
404 |
aattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttg |
503 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15016926 |
aattcgtgcaatgattcaatttgttcaggaacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttg |
15016827 |
T |
|
| Q |
504 |
gaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15016826 |
gaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
15016750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 3 - 580
Target Start/End: Complemental strand, 15002320 - 15001742
Alignment:
| Q |
3 |
acattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagata |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
15002320 |
acattaccacacaagcctttgttatttctcagtgcttcaattggagctctttcgaaagctgtaatgtttggagtcggaccctccaactggttgtaagata |
15002221 |
T |
|
| Q |
103 |
tatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactg |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15002220 |
tatcaacagttgtcaagcttaacatatcaacaaagctttagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactg |
15002121 |
T |
|
| Q |
203 |
gccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccctca |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15002120 |
gccaagcattgctggtatggttccattcatagaattcccactaagatcaaggttttcaataacattcaattggccaaactcaacaggaatgttcccctca |
15002021 |
T |
|
| Q |
302 |
aacttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcag |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
15002020 |
aacttattttggctcaaatttaactgcaataacatagacaacataccaagtttttcagggatgaatccactcaaattatttgttgcaagctccaatgcag |
15001921 |
T |
|
| Q |
402 |
ttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctt |
501 |
Q |
| |
|
||| || ||||||||| ||||||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15001920 |
ttagttgatgcaatgatgcaatttgtactggaacttctccataaagatgattgttacttaacgagagtttgatcaacaaagataagttttctaactcctt |
15001821 |
T |
|
| Q |
502 |
tggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
580 |
Q |
| |
|
||||||||| | | | ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15001820 |
tggaatttttcgcattagatggtttgaagacaagttaagctcctgtaaatttgttgctctgcctagttctggtggtatg |
15001742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 15011215 - 15010636
Alignment:
| Q |
1 |
agacattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaaga |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
15011215 |
agacattaccacataagcctttgttatttgtcaatgcttcaattggagctcttttgaaagctgtaacatttggaatcggaccctccaattggttgtaaga |
15011116 |
T |
|
| Q |
101 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15011115 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
15011016 |
T |
|
| Q |
201 |
tggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccct |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15011015 |
tggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaactcaacaggaatgttcccct |
15010916 |
T |
|
| Q |
300 |
caaacttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
15010915 |
caaacttattttggctcaaatttaactgcaataacatagacaacataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgc |
15010816 |
T |
|
| Q |
400 |
agttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcc |
499 |
Q |
| |
|
||||| || ||||||||| ||||||| |||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||| |||| |
|
|
| T |
15010815 |
agttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcc |
15010716 |
T |
|
| Q |
500 |
tttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtat |
579 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||||||||| || |||||||||||||| || ||||||||||||||||| |
|
|
| T |
15010715 |
tttggaatttttcccattagatggtttgaagacaagttaagctcctgtaaatttgttgcacttcctagttctggtggtat |
15010636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 15032673 - 15032094
Alignment:
| Q |
1 |
agacattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaaga |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| ||||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
15032673 |
agacattaccacataagcctttgttatttgtcaatgcttcaattggagcttttttgaaagctgtaatgtttggaattggaccctccaactggttgtaaga |
15032574 |
T |
|
| Q |
101 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
15032573 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagcgatttaac |
15032474 |
T |
|
| Q |
201 |
tggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccct |
299 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||| |
|
|
| T |
15032473 |
tgcccaagcattgatggtatggttccattcataaaattcccactaagatcaagattttcaataacattcaattgggcaaactcagcaggaatgttcccct |
15032374 |
T |
|
| Q |
300 |
caaacttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgc |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15032373 |
caaacttattttggctcaaatttaactgcaataacctagataacctaccaagtcttttagggatgaagccactcaaattatttgttgcaagctccaatgc |
15032274 |
T |
|
| Q |
400 |
agttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcc |
499 |
Q |
| |
|
||||| |||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15032273 |
agttagctcgtgcaatgatgcaatttgtacaggaacttctccagaaaggtgattgttacttaacgagagtttgatcaacaaagataagttttctagctcc |
15032174 |
T |
|
| Q |
500 |
tttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtat |
579 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
15032173 |
tttggaatttttcccgttagatggtttgaagacaagttaagctcctgtaaatttgttgcgctgcctagctctggtggtat |
15032094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 579
Target Start/End: Complemental strand, 15037235 - 15036656
Alignment:
| Q |
1 |
agacattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaaga |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15037235 |
agacattaccacataagcctttgttatttgtcaatgcttcaattggagctcttttgaaagctgtaatgtttggaatcggaccctccaactggttgtaaga |
15037136 |
T |
|
| Q |
101 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15037135 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttaagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
15037036 |
T |
|
| Q |
201 |
tggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccct |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15037035 |
tggccaagcattgctggtatggttccattcatagaattcccactaagatcaaggttttcaataacattcaattggccaaactcaacaggaatgttcccct |
15036936 |
T |
|
| Q |
300 |
caaacttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgc |
399 |
Q |
| |
|
||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
15036935 |
caagcttattatggctcaaattcaactgcaataacctagacaacataccaagtttttccaggatgaagccacttaagttatttgttgcaagctccaatgc |
15036836 |
T |
|
| Q |
400 |
agttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcc |
499 |
Q |
| |
|
||||| || ||||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| | || ||||||| |
|
|
| T |
15036835 |
agttagttgatgcaatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaacgagagtttgaacaacaaagataaatattttagctcc |
15036736 |
T |
|
| Q |
500 |
tttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtat |
579 |
Q |
| |
|
||||||||||| ||| | |||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
15036735 |
tttggaatttttcccattagatcgtttgaagacaagttaagctcctgtaaatttgttgctctgcctagttctggtggtat |
15036656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 96 - 579
Target Start/End: Complemental strand, 15025237 - 15024753
Alignment:
| Q |
96 |
taagatatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgat |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15025237 |
taagatatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagcgat |
15025138 |
T |
|
| Q |
196 |
ttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaactaa-caggaatgtt |
294 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
15025137 |
ttaactgcccaagcattgatggtatggttccattcataaaattcccactaagatcaagattttcaataacattcaattgggcaaactcagcaggaatgtt |
15025038 |
T |
|
| Q |
295 |
cccctcaaacttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctcc |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15025037 |
cccctcaaacttattttggctcaaatttaactgcaataacctagataacctaccaagtcttttagggatgaagccactcaaattatttgttgcaagctcc |
15024938 |
T |
|
| Q |
395 |
aatgcagttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttcta |
494 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15024937 |
aatgcagttagctcgtgcaatgatgcaatttgtacaggaacttctccagaaaggtgattgttacttaacgagagtttgatcaacaaagataagttttcta |
15024838 |
T |
|
| Q |
495 |
gctcctttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtat |
579 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
15024837 |
gctcctttggaatttttcccgttagatggtttgaagacaagttaagctcctgtaaatttgttgcgctgcctagctctggtggtat |
15024753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 559
Target Start/End: Original strand, 14522521 - 14523080
Alignment:
| Q |
1 |
agacattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaaga |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||| | ||||||| ||||||||||| ||| ||||||||| ||||||| |||||||||||| |||||||||| |
|
|
| T |
14522521 |
agacattaccgcacaagcctttgttatttctaaatgcttcaactggagctctttggaatgctgtaatgtttggaattggaccctccaaccggttgtaaga |
14522620 |
T |
|
| Q |
101 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14522621 |
tatatcaacagttgtcaaacttaacatatcaaaaaagcttaagggaatgttaccatagagattattatgtgagagattcaatgtttctaagcgatttaac |
14522720 |
T |
|
| Q |
201 |
tggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccct |
299 |
Q |
| |
|
|| |||||||||| ||||||||||||||||| | ||||||| ||||||||||||| |||||||||||||||||| |||| | |||||||||||| || | |
|
|
| T |
14522721 |
tgtccaagcattgttggtatggttccattcaaaaaattcccgctaagatcaagatcttcaataacattcaattgaccaagttcaacaggaatgtttcctt |
14522820 |
T |
|
| Q |
300 |
caaacttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgc |
399 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||| || ||||| ||||||||||||||||| ||||||| |
|
|
| T |
14522821 |
caaacttattttggctcaaattcaactgcaataacctagacaaccttccaagtttttcagggataaaaccacttaaattatttgttgcaagatccaatgt |
14522920 |
T |
|
| Q |
400 |
agttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcc |
499 |
Q |
| |
|
||||| ||| ||||||||| |||| ||| ||| |||||||| ||||||||||| ||||||| |||||||| ||||| |||||||||| |||| ||| |
|
|
| T |
14522921 |
agttagttcatgcaatgatgcaatctgcataggaacttctcccgaaagatgattattacttatcgagagttggatcagtgcagataagtttcctagatcc |
14523020 |
T |
|
| Q |
500 |
tttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgct |
559 |
Q |
| |
|
||||||||||| || |||| || ||||| ||||||| |||| ||||||||| |||||| |
|
|
| T |
14523021 |
tttggaatttttcctataagttgatttgaggacaagtcaagtatatgtaaattggttgct |
14523080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 4 - 580
Target Start/End: Complemental strand, 14468015 - 14467438
Alignment:
| Q |
4 |
cattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatat |
103 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||||| || ||| |||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14468015 |
cattaccacacaagtctttgttgtttctcagtgcttcaattggagcctgttggaaggctggaatgcttggaatcggaccctccaactggttgtacgatat |
14467916 |
T |
|
| Q |
104 |
atcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactgg |
203 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||| || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14467915 |
atctacagttgtcaagcttaacatatcaactgagctgaagagaatggtaccagaaagattattatgtgagagattcaatgtttctaagtgatttaactgt |
14467816 |
T |
|
| Q |
204 |
ccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccctcaa |
302 |
Q |
| |
|
|||| ||||||||| |||||||| |||| | ||||| ||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||| || |||| |
|
|
| T |
14467815 |
ccaaacattgctggaatggttccgttcaaaaaattctcactaagatcaagatcttcaagaacatttaattggccaaactcgacaggaatgtttccttcaa |
14467716 |
T |
|
| Q |
303 |
acttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagt |
402 |
Q |
| |
|
|| |||||| ||| ||||| || || |||||| | ||||| | ||||||| || ||||| | ||||| ||||||||||||| ||||||||| | | |
|
|
| T |
14467715 |
acatatttttgcttaaattcaagtgtaataacattgacaaacttccaagttgttttgggattgaaccacttaaattatttgttgaaagctccaaggtatc |
14467616 |
T |
|
| Q |
403 |
taattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctccttt |
502 |
Q |
| |
|
|| || ||||||||| ||| ||| |||| |||||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
14467615 |
tagtttttgcaatgatgcaacttgtgcaggaacttctcctgaaagatgattgttacttaccgagagttggatcaacaaagataagctttctagctccttt |
14467516 |
T |
|
| Q |
503 |
ggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
580 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
14467515 |
ggaatttttcccgtaagatggtttgaagacaggtttagttcatgtaaatttgttgctcggcctagttctggcggtatg |
14467438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 4 - 552
Target Start/End: Complemental strand, 14504194 - 14503645
Alignment:
| Q |
4 |
cattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatat |
103 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| |||||||| || ||| |||| |||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
14504194 |
cattaccacacaagtctttgttgtttctcagtgcttcaattggagcttgttggaaggctggaatgcttggaatcggaccctccaattggttgtatgatat |
14504095 |
T |
|
| Q |
104 |
atcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactgg |
203 |
Q |
| |
|
||||| | |||||||||||||||||||| || |||| |||| || |||||||| ||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14504094 |
atcaataattgtcaagcttaacatatcaccagagctaaaggggatcgtaccagacagattattatgtgagagattcaatgtttctaaatgatttaacact |
14503995 |
T |
|
| Q |
204 |
ccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccctcaa |
302 |
Q |
| |
|
|||| ||||| ||||| |||||||||||| |||| ||||| |||||||||| |||||||||||| ||| ||||||||| ||| |||||||| || |||| |
|
|
| T |
14503994 |
ccaaacattgaaggtatcgttccattcataaaatttccactgagatcaagatcttcaataacatttaatcggccaaactcaacgggaatgtttccttcaa |
14503895 |
T |
|
| Q |
303 |
acttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagt |
402 |
Q |
| |
|
||||||||||||||||||| || || | |||| ||||||| | |||||| || ||||||||||||||| ||||||||||||||||||||||| | ||| |
|
|
| T |
14503894 |
acttattttggctcaaattcaaatgtattaactcagacaaccttccaagtcttctagggatgaagccacttaaattatttgttgcaagctccaaggtagt |
14503795 |
T |
|
| Q |
403 |
taattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctccttt |
502 |
Q |
| |
|
|| | | ||||||||| ||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| |||||| |
|
|
| T |
14503794 |
tagtgcttgcaatgatgcaatttgtataggaacctctccagaaagatgattgttacttatcgagagtttgatcaacaaagacaagtttcctagatccttt |
14503695 |
T |
|
| Q |
503 |
ggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatt |
552 |
Q |
| |
|
|||||||| || |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14503694 |
ggaatttttccagtaagatggtttgatgacaagttaagttcatgtaaatt |
14503645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 580
Target Start/End: Original strand, 14532642 - 14533222
Alignment:
| Q |
1 |
agacattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| ||| ||||||||||||||||| ||||||||||| |||||||| || |
|
|
| T |
14532642 |
agacattaccacacaagcctttgttatttctaagtgcttcaattggagctttttggaaggctgtaatgcttggaattggaccctccaattggttgtatga |
14532741 |
T |
|
| Q |
101 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
200 |
Q |
| |
|
|||||||||| |||||||||||||||| | | | |||| | |||||||| ||||| ||||| |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
14532742 |
tatatcaacaattgtcaagcttaacatcttaccgtagctcaaaggaatggttccagaaagattattatgtgaaagattcaatgtttgtaagtgatttaac |
14532841 |
T |
|
| Q |
201 |
tggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccct |
299 |
Q |
| |
|
|| |||||||||| ||||||||||||| ||||| ||| ||||||||||||||| ||||||||| || |||||| |||||| |||||||||||| || | |
|
|
| T |
14532842 |
tgtccaagcattgatggtatggttccactcataacattttcactaagatcaagatcttcaataacctttaattggtcaaactcaacaggaatgtttcctt |
14532941 |
T |
|
| Q |
300 |
caaacttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgc |
399 |
Q |
| |
|
| |||||||||||||||||||| || || | |||| ||||||| | |||||| || ||||||||||||||| ||||||||| || |||||||||| || |
|
|
| T |
14532942 |
cgaacttattttggctcaaattcaaatgtattaactcagacaaccttccaagtcttctagggatgaagccacttaaattatttttttcaagctccaaggc |
14533041 |
T |
|
| Q |
400 |
agttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcc |
499 |
Q |
| |
|
||||| | | |||| |||| ||||||| |||| |||||||| |||||| ||||||| ||| |||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
14533042 |
agttagtgcctgcagtgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcc |
14533141 |
T |
|
| Q |
500 |
tttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
580 |
Q |
| |
|
| ||||||||| || ||||||||||||||||||| |||||||| ||||| | |||||||| ||||||||| | |||||| |
|
|
| T |
14533142 |
tctggaatttttccagtaagatggtttgaagacagattaagttcttgtaattgtgttgctccacctagttcttgaggtatg |
14533222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 4 - 334
Target Start/End: Complemental strand, 14482197 - 14481866
Alignment:
| Q |
4 |
cattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatat |
103 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| |||||| | | | ||| |||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14482197 |
cattaccacacaagtctttgttgtttctcagtgcttcaattggagttttctggaaggctggaatgcttggaatcggaccctccaactggttgtacgatat |
14482098 |
T |
|
| Q |
104 |
atcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactgg |
203 |
Q |
| |
|
||| |||||| ||||||||||||| | | || | || |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14482097 |
atctacagttatcaagcttaacatctaaccatatctgaagggaatggtaccagaaagattattatgtgagagattcaatgtttctaagtgatttaactgt |
14481998 |
T |
|
| Q |
204 |
ccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccctcaa |
302 |
Q |
| |
|
|||| ||||||||| |||||||| |||| | ||||| ||||||||||||||| ||||| |||||| ||||||||||||| ||||||||||| || |||| |
|
|
| T |
14481997 |
ccaaacattgctggaatggttccgttcaaaaaattctcactaagatcaagatcttcaagaacatttaattggccaaactcgacaggaatgtttccttcaa |
14481898 |
T |
|
| Q |
303 |
acttattttggctcaaatttaactgcaataac |
334 |
Q |
| |
|
|| |||||| ||| ||||| || || |||||| |
|
|
| T |
14481897 |
acatatttttgcttaaattcaagtgtaataac |
14481866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 1 - 396
Target Start/End: Complemental strand, 15040959 - 15040578
Alignment:
| Q |
1 |
agacattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||| ||| ||| | ||| | || ||| ||||||| ||||||| ||| |||||| | || |
|
|
| T |
15040959 |
agacattaccacacaagcctttgttatttcttaatgcttcaaatggggcttgtaggaaggatgaaatttttggaattggacccttcaattggttgcatga |
15040860 |
T |
|
| Q |
101 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
200 |
Q |
| |
|
|||||||||||||||||||| | |||| ||| || || | |||||||||||| | | ||||| ||||||||||||| |||||||| |
|
|
| T |
15040859 |
tatatcaacagttgtcaagcctgacatctcaccataggtcaagggaatggtacaaaaaagatt---------------caatgtttctaagcgatttaac |
15040775 |
T |
|
| Q |
201 |
tggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccct |
299 |
Q |
| |
|
|| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| || || || |||| || | |||||||||| || | |
|
|
| T |
15040774 |
tgtccaagcattgttggtatggttccattcaaagaattcccactaagatcaagattttcaataacttttaactgtccaatctcatcaggaatgtttcctt |
15040675 |
T |
|
| Q |
300 |
caaacttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaa |
396 |
Q |
| |
|
|||||||||||||||||| |||||| || |||||| |||| || | ||||||| || |||| ||||||||| |||||||||||||| |||||||| |
|
|
| T |
15040674 |
caaacttattttggctcatatttaagtgtaataacatagataatcttccaagttgttttgggacgaagccacttaaattatttgttgccagctccaa |
15040578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 12994 - 12414
Alignment:
| Q |
1 |
agacattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| |||| |||| | ||||||||||||||||| |||||||| || |
|
|
| T |
12994 |
agacattaccacacaagcctttgttatttctcagtgcttcaattggagcttttaggaaggctggaatgttaggaatcggaccctccaattggttgtatga |
12895 |
T |
|
| Q |
101 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
200 |
Q |
| |
|
|||||||||| |||||||||||||||| | | | |||| | |||||||| ||||| ||||| |||||||| ||||||||||||| || |||||||||| |
|
|
| T |
12894 |
tatatcaacaattgtcaagcttaacatcttaccgtagctcaaaggaatggttccagaaagattattatgtgaaagattcaatgtttgtatgtgatttaac |
12795 |
T |
|
| Q |
201 |
tggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccct |
299 |
Q |
| |
|
|| |||||||||| |||||||||||| |||| | |||| |||||||| ||||||| ||||||||| | ||||||||||||| || |||||||| || | |
|
|
| T |
12794 |
tgtccaagcattgatggtatggttccgttcaaaaaatttccactaaggtcaagatcttcaataacttctaattggccaaactcaatgggaatgtttcctt |
12695 |
T |
|
| Q |
300 |
caaacttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgc |
399 |
Q |
| |
|
||||| |||||||||||||||| || || | |||| ||||||| | |||||| || ||||||||||||||| ||||||||| || |||||||||| || |
|
|
| T |
12694 |
caaacctattttggctcaaattcaaatgtattaactcagacaaccttccaagtcttctagggatgaagccacttaaattatttttttcaagctccaaggc |
12595 |
T |
|
| Q |
400 |
agttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcc |
499 |
Q |
| |
|
||||| | | |||| |||| ||||||| |||| |||||||| |||||| ||||||| ||| |||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
12594 |
agttagtgcctgcagtgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcc |
12495 |
T |
|
| Q |
500 |
tttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
580 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| |||||||| ||||| | |||||||| ||||||||| | |||||| |
|
|
| T |
12494 |
tttggaatttttccagtaagatggtttgaagacagattaagttcttgtaattgtgttgctccacctagttcttgcggtatg |
12414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 509
Target Start/End: Complemental strand, 6701 - 6197
Alignment:
| Q |
6 |
ttaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatat |
105 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| ||||||| ||||||| |||| |||| ||||||| ||||| || || |||||||| ||||||| |
|
|
| T |
6701 |
ttaccacacaagcctttgttatttcttaatgcttcaattggagcatttttgaaggctggaatgtttggaattggaccttcaaattggttgtatgatatat |
6602 |
T |
|
| Q |
106 |
caacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggcc |
205 |
Q |
| |
|
||| |||||| |||||| |||| ||| || || | |||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
6601 |
caatagttgttaagcttgacatctcaccataggtcaagggaatggtaccagaaaaattattatgtgagagattcaatgtttctaagcgatttaactctcc |
6502 |
T |
|
| Q |
206 |
aagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccctcaaac |
304 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| | |||||||||||||||||||||| |||||||| ||||||| | ||||||||| || |||||| |
|
|
| T |
6501 |
aagcattgttggtatggttccattcaaaacattctcgctaagatcaagattttcaataattttcaattgtccaaactcagcaggaatgtctccttcaaac |
6402 |
T |
|
| Q |
305 |
ttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagtta |
404 |
Q |
| |
|
||||||||||||||||| || | |||||| ||| || | ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6401 |
ttattttggctcaaattcaagtccaataaattaggtaatcttccaagttgttctgggatgaagccactgaaattatttgttgcaagctccaagatagtta |
6302 |
T |
|
| Q |
405 |
attcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttgg |
504 |
Q |
| |
|
|| |||||| || ||||||| ||||| |||||||| |||||||||| |||||| | |||| | |||||| | ||||||||| ||||||||||||| |
|
|
| T |
6301 |
ttttatgcaataatgcaatttgttcaggaacttctcctacaagatgattgctacttatcaagagctggatcaatgaggataagtttcctagctcctttgg |
6202 |
T |
|
| Q |
505 |
aattt |
509 |
Q |
| |
|
||||| |
|
|
| T |
6201 |
aattt |
6197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 580
Target Start/End: Complemental strand, 13637 - 13057
Alignment:
| Q |
1 |
agacattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| |||| |||| | ||||||||||||||||| |||||||| || |
|
|
| T |
13637 |
agacattaccacacaagcctttgttatttctcagtgcttcaattggagcttttaggaaggctggaatgttaggaatcggaccctccaattggttgtatga |
13538 |
T |
|
| Q |
101 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
200 |
Q |
| |
|
|||||||||| |||||||||||||||| | | | |||| | |||||||| ||||| ||||| |||||||| ||||||||||||| || |||||||||| |
|
|
| T |
13537 |
tatatcaacaattgtcaagcttaacatcttaccgtagctcaaaggaatggttccagaaagattattatgtgaaagattcaatgtttgtatgtgatttaac |
13438 |
T |
|
| Q |
201 |
tggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccct |
299 |
Q |
| |
|
|| |||||||||| |||||||||||| |||| | |||| |||||||| ||||||| ||||||||| | ||||||||||||| || |||||||| || | |
|
|
| T |
13437 |
tgtccaagcattgatggtatggttccgttcaaaaaatttccactaaggtcaagatcttcaataacttctaattggccaaactcaatgggaatgtttcctt |
13338 |
T |
|
| Q |
300 |
caaacttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgc |
399 |
Q |
| |
|
||||| |||||||||||||||| || || | |||| ||||||| | |||||| || ||||||||||||||| ||||||||| || |||||||||| || |
|
|
| T |
13337 |
caaacctattttggctcaaattcaaatgtattaactcagacaaccttccaagtcttctagggatgaagccacttaaattatttttttcaagctccaaggc |
13238 |
T |
|
| Q |
400 |
agttaattcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcc |
499 |
Q |
| |
|
||||| | | |||| |||| ||||||| |||| |||||||| |||||| ||||||| ||| |||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
13237 |
agttagtgcctgcagtgatgcaatttgtacaggaacttctcccaaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcc |
13138 |
T |
|
| Q |
500 |
tttggaattttccccgtaagatggtttgaagacaagttaagttcatgtaaatttgttgctctgcctagttctggtggtatg |
580 |
Q |
| |
|
||||||||||| || ||||||||||||||||||| |||||||| ||||| | |||||||| ||||||||| | |||||| |
|
|
| T |
13137 |
tttggaatttttccagtaagatggtttgaagacagattaagttcttgtaattgtgttgctccacctagttcttgcggtatg |
13057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 509
Target Start/End: Complemental strand, 7345 - 6841
Alignment:
| Q |
6 |
ttaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaagatatat |
105 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| ||||||| ||||||| |||| |||| ||||||| ||||| || || |||||||| ||||||| |
|
|
| T |
7345 |
ttaccacacaagcctttgttatttcttaatgcttcaattggagcatttttgaaggctggaatgtttggaattggaccttcaaattggttgtatgatatat |
7246 |
T |
|
| Q |
106 |
caacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaactggcc |
205 |
Q |
| |
|
||| |||||| |||||| |||| ||| || || | |||||||||||||||| | ||| ||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
7245 |
caatagttgttaagcttgacatctcaccataggtcaagggaatggtaccagaaaaattattatgtgagagattcaatgtttctaagcgatttaactctcc |
7146 |
T |
|
| Q |
206 |
aagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaact-aacaggaatgttcccctcaaac |
304 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||| | |||||||||||||||||||||| |||||||| ||||||| | ||||||||| || |||||| |
|
|
| T |
7145 |
aagcattgttggtatggttccattcaaaacattctcgctaagatcaagattttcaataattttcaattgtccaaactcagcaggaatgtctccttcaaac |
7046 |
T |
|
| Q |
305 |
ttattttggctcaaatttaactgcaataacctagacaacataccaagtttttcagggatgaagccactgaaattatttgttgcaagctccaatgcagtta |
404 |
Q |
| |
|
||||||||||||||||| || | |||||| ||| || | ||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7045 |
ttattttggctcaaattcaagtccaataaattaggtaatcttccaagttgttctgggatgaagccactgaaattatttgttgcaagctccaagatagtta |
6946 |
T |
|
| Q |
405 |
attcgtgcaatgattcaatttgctcagggacttctccagaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttgg |
504 |
Q |
| |
|
|| |||||| || ||||||| ||||| |||||||| |||||||||| |||||| | |||| | |||||| | ||||||||| ||||||||||||| |
|
|
| T |
6945 |
ttttatgcaataatgcaatttgttcaggaacttctcctacaagatgattgctacttatcaagagctggatcaatgaggataagtttcctagctcctttgg |
6846 |
T |
|
| Q |
505 |
aattt |
509 |
Q |
| |
|
||||| |
|
|
| T |
6845 |
aattt |
6841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 7e-26; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 16103095 - 16102867
Alignment:
| Q |
1 |
agacattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaaga |
100 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| |||| ||| ||| || |||||||| |||| | || | ||||||||||| ||||| || || |
|
|
| T |
16103095 |
agacattaccacacaagtctttattatttctcaacacttcgattgtagcgtttctgaaagctcgaatgttggggagtggaccctccaattggttatatga |
16102996 |
T |
|
| Q |
101 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
200 |
Q |
| |
|
||||||||||| ||||||||||||||| | | ||||||| |||||||| ||||| ||||| |||||||||| |||||||||||| |||| || ||| |
|
|
| T |
16102995 |
tatatcaacagatgtcaagcttaacatttgatcaaagctagagggaataaagccagaaagattattatgtgagatattcaatgtttccaagtatttcaac |
16102896 |
T |
|
| Q |
201 |
tggccaagcattgctggtatggttccatt |
229 |
Q |
| |
|
|| |||||||| |||||| |||||||| |
|
|
| T |
16102895 |
tgtgtaagcattgatggtattgttccatt |
16102867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 14606113 - 14605834
Alignment:
| Q |
1 |
agacattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaaga |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| ||| ||| | |||||||| ||| | || | ||||||||||| ||||| || || |
|
|
| T |
14606113 |
agacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggttatatga |
14606014 |
T |
|
| Q |
101 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
200 |
Q |
| |
|
||||||||||| ||| ||||| ||||| | | | ||||| |||||||| |||||| ||||| |||||||||| |||||||||||| |||| || ||| |
|
|
| T |
14606013 |
tatatcaacagatgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtatttcaac |
14605914 |
T |
|
| Q |
201 |
tggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaa |
280 |
Q |
| |
|
|| |||||||| |||||| ||||||| || | |||| ||||| ||||| || |||||| ||||| ||||| ||||| |
|
|
| T |
14605913 |
tgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaa |
14605834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 16025290 - 16025011
Alignment:
| Q |
1 |
agacattaccacacaagcctttgttatttctcagtgcttcacttggagctcttttgaaagctgtaatgcttggaatcggaccctccaactggttgtaaga |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||| ||| ||| | |||||||| ||| | || | ||||||||||| ||||| || || |
|
|
| T |
16025290 |
agacattaccacacaagcctttattatttctcaccacttcaattgtagcgttgctgaaagctcgaatattggggagtggaccctccaattggttatatga |
16025191 |
T |
|
| Q |
101 |
tatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagattcaatgtttctaagtgatttaac |
200 |
Q |
| |
|
||||||||||| || ||||| ||||| | | | ||||| |||||||| |||||| ||||| |||||||||| |||||||||||| |||| || ||| |
|
|
| T |
16025190 |
tatatcaacagacgttaagctgaacatctgatcgaagctagagggaataaaaccagaaagattattatgtgagatattcaatgtttccaagtatttcaac |
16025091 |
T |
|
| Q |
201 |
tggccaagcattgctggtatggttccattcatagaattcccactaagatcaagattttcaataacattcaattggccaaa |
280 |
Q |
| |
|
|| |||||||| |||||| ||||||| || | |||| ||||| ||||| || |||||| ||||| ||||| ||||| |
|
|
| T |
16025090 |
tgtgtaagcattgatggtattgttccatccaaaaaatttccactgagatctaggatttcaaggacattaaattgtccaaa |
16025011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 253
Target Start/End: Complemental strand, 16172695 - 16172520
Alignment:
| Q |
78 |
ggaccctccaactggttgtaagatatatcaacagttgtcaagcttaacatatcaacaaagcttgagggaatggtaccagagagattgttatgtgagagat |
177 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||||| || || || ||||| | | | ||||| |||||||| ||||| ||||| |||||||||| || |
|
|
| T |
16172695 |
ggaccttccaattggttatatgatatatcaacagacgttaaactgaacatctgatcgaagctagagggaataaatccagaaagattattatgtgagatat |
16172596 |
T |
|
| Q |
178 |
tcaatgtttctaagtgatttaactggccaagcattgctggtatggttccattcatagaattcccactaagatcaag |
253 |
Q |
| |
|
|||||||||| |||| || ||||| |||||||| |||||| |||||||| | | |||| ||||| |||||||| |
|
|
| T |
16172595 |
tcaatgtttccaagtatttcaactgtgtaagcattgatggtattgttccatttaaaaaatttccactcagatcaag |
16172520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 541
Target Start/End: Complemental strand, 16024819 - 16024755
Alignment:
| Q |
477 |
acaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagt |
541 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||| || |||||||||||||| |||| |||| |
|
|
| T |
16024819 |
acaaagataagttgcttaactcctttggaatttcccctgtgagatggtttgaagataagtcaagt |
16024755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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