View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11785_high_1 (Length: 1031)

Name: NF11785_high_1
Description: NF11785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11785_high_1
NF11785_high_1
[»] chr8 (2 HSPs)
chr8 (13-341)||(12171101-12171428)
chr8 (13-341)||(12415529-12415856)
[»] chr7 (3 HSPs)
chr7 (766-956)||(223975-224168)
chr7 (642-706)||(224199-224262)
chr7 (622-676)||(5955458-5955512)
[»] chr6 (6 HSPs)
chr6 (766-956)||(24607885-24608073)
chr6 (806-931)||(27576437-27576563)
chr6 (642-706)||(24607794-24607858)
chr6 (642-711)||(27576317-27576386)
chr6 (860-931)||(27534183-27534256)
chr6 (658-711)||(30123656-30123709)
[»] chr3 (7 HSPs)
chr3 (744-956)||(25373083-25373295)
chr3 (820-931)||(11468193-11468306)
chr3 (613-698)||(54575115-54575200)
chr3 (876-931)||(53489418-53489473)
chr3 (622-676)||(53489168-53489222)
chr3 (658-711)||(2614527-2614580)
chr3 (658-711)||(6935608-6935661)
[»] chr5 (4 HSPs)
chr5 (744-864)||(31067553-31067673)
chr5 (642-706)||(31067484-31067548)
chr5 (658-711)||(4931282-4931335)
chr5 (658-711)||(35192773-35192826)
[»] chr2 (4 HSPs)
chr2 (613-708)||(29732789-29732884)
chr2 (731-955)||(29732874-29733090)
chr2 (902-956)||(38563005-38563059)
chr2 (613-698)||(45155721-45155806)
[»] scaffold0090 (1 HSPs)
scaffold0090 (876-956)||(50922-51002)
[»] chr1 (1 HSPs)
chr1 (605-698)||(24988287-24988380)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 12171428 - 12171101
Alignment:
Q  13 atggacatcataggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttcct 110  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||    
T  12171428 atggacatcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttcct 12171329  T
Q  111 tgtcctcggtaactacagttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttc 210  Q
    ||||||| | ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||    
T  12171328 tgtcctcagcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattc 12171229  T
Q  211 cgacaaagaaaatgagaagaatacagtctccacacaatcacatgacaatattaattta-tatacactc--ttttcagagaaatttttaactttgaactaa 307  Q
    |||||||||||||||||| | | |||||||||   ||| |||| || || |||| ||| |||||||||  |||||||| |||||||||||||||||| ||    
T  12171228 cgacaaagaaaatgagaaaattccagtctcca---aat-acattac-attttaagttattatacactcaattttcagacaaatttttaactttgaaccaa 12171134  T
Q  308 gaaaagtaacaagattcacttagactgagctgga 341  Q
    |||||||| | |||||||||||| ||||||||||    
T  12171133 gaaaagtagc-agattcacttagcctgagctgga 12171101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 12415856 - 12415529
Alignment:
Q  13 atggacatcataggaaagaatcaccagtgaaaacaagaactcacatttattggagtgccagag--gtaagaaatgctaatttccccaagaaaatgttcct 110  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||    
T  12415856 atggacatcataggaaataatcaccagtgaaaataagaactcacatttattggagtgccagagaggtaagaaatgctaatttccccaagaaaaagttcct 12415757  T
Q  111 tgtcctcggtaactacagttccagcacaagcagttgacagaacttcaaccaaggaaccaaccgcgcctccatgcagtgttccataggcattctgcatttc 210  Q
    ||||||| | ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |||    
T  12415756 tgtcctcagcaactacagttctagcacaagcagttgacagaacttcaactaaggacccaacagcgcctccatgcagtgttccataggcattctgcaattc 12415657  T
Q  211 cgacaaagaaaatgagaagaatacagtctccacacaatcacatgacaatattaattta-tatacactc--ttttcagagaaatttttaactttgaactaa 307  Q
    |||||||||||||||||| | | |||||||||   ||| |||| || || |||| ||| |||||||||  |||||||| |||||||||||||||||| ||    
T  12415656 cgacaaagaaaatgagaaaattccagtctcca---aat-acattac-attttaagttattatacactcaattttcagacaaatttttaactttgaaccaa 12415562  T
Q  308 gaaaagtaacaagattcacttagactgagctgga 341  Q
    |||||||| | |||||||||||| ||||||||||    
T  12415561 gaaaagtagc-agattcacttagcctgagctgga 12415529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 2e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 766 - 956
Target Start/End: Complemental strand, 224168 - 223975
Alignment:
Q  766 aaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaac 865  Q
    |||||||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  224168 aaccttctacgttgttattttctttagtttatacttgggcaaaaaaataaagtttataatgttatttctagagaatgattataatgttcgttattagaac 224069  T
Q  866 tttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa-taaatttatattgtatttttatttg 956  Q
     ||||||||||||  || ||||||| ||| |||||| ||||||||| |||||||||||||||||||||  ||| |||||||||  |||||||||    
T  224068 attgttattttatacgacaagtatgggcaaaaaacttgaagaagtgctctaacaaaaataagaagaaagaaaagttatattgtggttttatttg 223975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 642 - 706
Target Start/End: Complemental strand, 224262 - 224199
Alignment:
Q  642 ataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 706  Q
    |||||||||  |||||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  224262 ataagaaatgatcatcattgtaactaacataaaa-taatcaatattgtaatcaataaaattaaca 224199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 622 - 676
Target Start/End: Complemental strand, 5955512 - 5955458
Alignment:
Q  622 tgaaaataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaa 676  Q
    ||||||| | ||||| ||| |||||||||  ||||||||||||||||||||||||    
T  5955512 tgaaaatgaaatccgtaaacataagaaatactcatcattgtaactaacacaaaaa 5955458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 9e-42; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 766 - 956
Target Start/End: Original strand, 24607885 - 24608073
Alignment:
Q  766 aaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaac 865  Q
    |||||||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||||||| ||| || | |||||||||||||||||||||||||||    
T  24607885 aaccttctacgttgttattttctttagtttatactttggcaaaaaaataaagtttataatgttatttttagagaatgattataatgttcgttattagaac 24607984  T
Q  866 tttgttattttatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 956  Q
     ||||  || || || ||||||| ||| |||||| ||||||||| ||||||||||||||||||||| ||| ||||||| |  |||||||||    
T  24607985 attgt--ttatacgacaagtatgggcaaaaaacttgaagaagtgctctaacaaaaataagaagaaaaaaagttatattttggttttatttg 24608073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 806 - 931
Target Start/End: Original strand, 27576437 - 27576563
Alignment:
Q  806 aaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaactttgttattttat--gataagtatgagcacaaaactagaa 903  Q
    |||| |||||||||||||||||||||| || | | |||||||||||||| ||| |||| ||||||||||||||  || |||||||  || |||| |||||    
T  27576437 aaaaaaataaagtttataatgtttttt-tagagattgattataatgttctttactagagctttgttattttatacgaaaagtatggacaaaaaattagaa 27576535  T
Q  904 gaagtgatctaacaaaaataagaagaaa 931  Q
    ||| || |||||||||||||||||||||    
T  27576536 gaaatgctctaacaaaaataagaagaaa 27576563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 642 - 706
Target Start/End: Original strand, 24607794 - 24607858
Alignment:
Q  642 ataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 706  Q
    ||||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  24607794 ataagaaatggtcatcattgtaactaatacggaaatgatcaatattgtaatcaataaaattaaca 24607858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 642 - 711
Target Start/End: Original strand, 27576317 - 27576386
Alignment:
Q  642 ataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 711  Q
    ||||||||||||||||||||||||||| |||   | ||||||||| ||||||||||||||||||||||||    
T  27576317 ataagaaattgtcatcattgtaactaatacatggaggatcaatatagtaatcaataaaattaacatacaa 27576386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 860 - 931
Target Start/End: Original strand, 27534183 - 27534256
Alignment:
Q  860 tagaactttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa 931  Q
    |||| ||||||||||||||  || |||||||  || |||| ||||||||||| |||||||||||||||||||||    
T  27534183 tagagctttgttattttatacgaaaagtatggacaaaaaattagaagaagtgctctaacaaaaataagaagaaa 27534256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 658 - 711
Target Start/End: Original strand, 30123656 - 30123709
Alignment:
Q  658 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 711  Q
    ||||||||||||||| ||| |||||||||| |||||||||| || || ||||||    
T  30123656 attgtaactaacacagaaaagatcaatattctaatcaataatataaaaatacaa 30123709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 9e-42; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 744 - 956
Target Start/End: Original strand, 25373083 - 25373295
Alignment:
Q  744 atttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatga 843  Q
    |||| ||| |||||||| | | |||||||| ||||||||||||||||| |||||||| ||  |||| |||||||||||||||| | |||||| | |||||    
T  25373083 attttaaaggaatatctttatcaaccttctacgttgttattttctttagtttatacttaggaaaaa-aataaagtttataatgctatttctagagaatga 25373181  T
Q  844 ttataatgttcgttattagaactttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttata 941  Q
    |||||||||| ||||||||||| ||||||||||||  || ||||||| ||| |||||| ||||||||| ||||| ||||||||||||||| ||| |||||    
T  25373182 ttataatgttagttattagaacattgttattttataagacaagtatgggcaaaaaacttgaagaagtgctctaataaaaataagaagaaa-aaagttata 25373280  T
Q  942 ttgtatttttatttg 956  Q
    ||||  |||||||||    
T  25373281 ttgtggttttatttg 25373295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 820 - 931
Target Start/End: Complemental strand, 11468306 - 11468193
Alignment:
Q  820 tataatgttttttctataaaatgattataatgttcgttattagaactttgttattt--tatgataagtatgagcacaaaactagaagaagtgatctaaca 917  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||| |||||||||  || |||||||||  ||| |||||| ||||||||| |||||||    
T  11468306 tataatgttatttctagagaatgattataatgttcgttattagaacattgttatttgatacgataagtattggcaaaaaacttgaagaagtgctctaaca 11468207  T
Q  918 aaaataagaagaaa 931  Q
    ||||||||||||||    
T  11468206 aaaataagaagaaa 11468193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 613 - 698
Target Start/End: Original strand, 54575115 - 54575200
Alignment:
Q  613 tattcaaactgaaaataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataa 698  Q
    |||| ||| ||||||| | ||||| ||| |||||||||| ||||||||||||||||||||||||  ||| ||||| |||| |||||    
T  54575115 tatttaaattgaaaatgaaatccgtaaacataagaaattatcatcattgtaactaacacaaaaaatatccatattctaataaataa 54575200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 876 - 931
Target Start/End: Original strand, 53489418 - 53489473
Alignment:
Q  876 tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa 931  Q
    |||||||||||||||   |||| || |||||||| |||||||||||||||||||||    
T  53489418 tatgataagtatgaggcaaaaattataagaagtgctctaacaaaaataagaagaaa 53489473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 622 - 676
Target Start/End: Original strand, 53489168 - 53489222
Alignment:
Q  622 tgaaaataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaa 676  Q
    ||||||||||||||| ||| |||| |||  ||||| |||||||||||||||||||    
T  53489168 tgaaaataagatccgtaaagataaaaaaaagtcattattgtaactaacacaaaaa 53489222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 658 - 711
Target Start/End: Complemental strand, 2614580 - 2614527
Alignment:
Q  658 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 711  Q
    |||||||||| ||||||||  ||||||||| ||||||||||||| || ||||||    
T  2614580 attgtaactatcacaaaaaatatcaatattttaatcaataaaataaaaatacaa 2614527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 658 - 711
Target Start/End: Original strand, 6935608 - 6935661
Alignment:
Q  658 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 711  Q
    ||||||||||||||| ||| |||||||||| |||||||||| || || ||||||    
T  6935608 attgtaactaacacataaaagatcaatattctaatcaataacataaaaatacaa 6935661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 744 - 864
Target Start/End: Original strand, 31067553 - 31067673
Alignment:
Q  744 atttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatga 843  Q
    |||||||| |||||||| | | ||| ||||  |||||||||||||||| |||||||| || ||||| |||||||||||||||||| ||| || | |||||    
T  31067553 atttcaaaggaatatctttatcaactttctaagttgttattttctttagtttatacttaggcaaaaaaataaagtttataatgttatttttagagaatga 31067652  T
Q  844 ttataatgttcgttattagaa 864  Q
    |||||||||||||||||||||    
T  31067653 ttataatgttcgttattagaa 31067673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 642 - 706
Target Start/End: Original strand, 31067484 - 31067548
Alignment:
Q  642 ataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 706  Q
    |||| |||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  31067484 ataaaaaatggtcatcattataactaacacagaaatgatcaatattgtaatcaatacaattaaca 31067548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 658 - 711
Target Start/End: Original strand, 4931282 - 4931335
Alignment:
Q  658 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 711  Q
    ||||||| ||||||| ||| |||||||||| ||||||||||||| || ||||||    
T  4931282 attgtaattaacacataaaagatcaatattctaatcaataaaataaaaatacaa 4931335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 658 - 711
Target Start/End: Complemental strand, 35192826 - 35192773
Alignment:
Q  658 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 711  Q
    |||||||||||||||||||  ||||||||| |||||||||| || || ||||||    
T  35192826 attgtaactaacacaaaaaatatcaatattctaatcaataatataaaaatacaa 35192773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 613 - 708
Target Start/End: Original strand, 29732789 - 29732884
Alignment:
Q  613 tattcaaactgaaaataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacata 708  Q
    |||||||||| ||||||||||||| ||| ||| |||||  |||||||||||||||||||  | | |||||||||||||||||||||||||||||||    
T  29732789 tattcaaactaaaaataagatccgtaaaaataggaaatgatcatcattgtaactaacacggagaggatcaatattgtaatcaataaaattaacata 29732884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 731 - 955
Target Start/End: Original strand, 29732874 - 29733090
Alignment:
Q  731 aaattaacatacaatttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgtttt 830  Q
    |||||||||||  |||| || ||||||||| | | ||| |||| ||||||||||||||||| |||||||  ||  |||| |||||||||||||           
T  29732874 aaattaacata--attttaatcgaatatctttatcaactttctacgttgttattttctttagtttatacggaggaaaaaaaataaagtttata------- 29732964  T
Q  831 ttctataaaatgattataatgttcgttattagaactttgttattt--tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaag 928  Q
    | ||| | |||||||||||||||| |||||| |||||||||||||  ||  ||||||||| ||| ||||||||||| |||| ||||||||||| | |||     
T  29732965 tcctagagaatgattataatgttcattattaaaactttgttatttgatacaataagtatgggcaaaaaactagaagcagtgctctaacaaaaagaggaa- 29733063  T
Q  929 aaataaatttatattgtatttttattt 955  Q
    ||| ||| ||||||||| |||||||||    
T  29733064 aaacaaagttatattgtgtttttattt 29733090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 902 - 956
Target Start/End: Complemental strand, 38563059 - 38563005
Alignment:
Q  902 aagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 956  Q
    ||||| || ||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  38563059 aagaaatgctctaacaaaaataaggagatataaagttatattgtatttttatttg 38563005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 613 - 698
Target Start/End: Original strand, 45155721 - 45155806
Alignment:
Q  613 tattcaaactgaaaataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataa 698  Q
    |||| ||| ||||||||||||||| ||| || | |||  ||  | ||||||||||||||| ||| |||||||||| ||||||||||    
T  45155721 tattgaaattgaaaataagatccgtaaagattaaaaaaagtgtttattgtaactaacacataaaagatcaatattctaatcaataa 45155806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 876 - 956
Target Start/End: Original strand, 50922 - 51002
Alignment:
Q  876 tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 956  Q
    ||||||||||||||||  |||| || |||||||| ||||| ||||||||||||||| ||  ||||||| | ||||||||||    
T  50922 tatgataagtatgagccaaaaattataagaagtgttctaaaaaaaataagaagaaaaaatattatattttgtttttatttg 51002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 605 - 698
Target Start/End: Complemental strand, 24988380 - 24988287
Alignment:
Q  605 caatcttttattcaaactgaaaataagatccgcaaatataagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataa 698  Q
    ||||||| |||| ||| ||||||| | || || ||| |||| ||||  ||||||| |||||||||||||||| |||| ||||| |||| |||||    
T  24988380 caatcttctatttaaattgaaaatgaaattcgtaaacataaaaaataatcatcatggtaactaacacaaaaaagatctatattctaataaataa 24988287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University