View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11785_high_10 (Length: 293)

Name: NF11785_high_10
Description: NF11785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11785_high_10
NF11785_high_10
[»] chr5 (5 HSPs)
chr5 (1-220)||(33543587-33543817)
chr5 (1-169)||(33361261-33361435)
chr5 (229-276)||(33355736-33355783)
chr5 (229-276)||(33543806-33543853)
chr5 (161-220)||(33355772-33355836)
[»] chr3 (1 HSPs)
chr3 (146-212)||(36243872-36243936)
[»] chr4 (1 HSPs)
chr4 (134-171)||(23438951-23438988)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 8e-95; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 33543587 - 33543817
Alignment:
Q  1 tttttacttgtttttggacaaaaactttgct------aatgtggattatgaaatcgaaactgaataaaactggaagctttgtggattaaggtctaacaaa 94  Q
    |||||||||||| ||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33543587 tttttacttgttgttggacaaaaactttgctttatataatgtggattatgaaatcgaaactgaataaaactggaagctttgtggattaaggtctaacaaa 33543686  T
Q  95 gttagtttttccattccgtaaaacattaacaaatttaagatgtctttgacaggggaataaggagatataaccaaaagggtctttgacatagat-----tg 189  Q
    |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||    
T  33543687 gttagtttttccattccgtaaaacttaaacaaatttaagatgtctttgacaggggaataaggagatataaccaaaagggtctttgacatagattgatatg 33543786  T
Q  190 atataaccaagctcattacaatgtcgtcttt 220  Q
    |||||||||||||||||||||||||||||||    
T  33543787 atataaccaagctcattacaatgtcgtcttt 33543817  T

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Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 33361435 - 33361261
Alignment:
Q  1 tttttacttgtttttggacaaaaactttgct------aatgtggattatgaaatcgaaactgaataaaactggaagctttgtggattaaggtctaacaaa 94  Q
    |||||||||||| ||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33361435 tttttacttgttgttggacaaaaactttgctttatataatgtggattatgaaatcgaaactgaataaaactggaagctttgtggattaaggtctaacaaa 33361336  T
Q  95 gttagtttttccattccgtaaaacattaacaaatttaagatgtctttgacaggggaataaggagatataaccaaa 169  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33361335 gttagtttttccattccgtaaaactttaacaaatttaagatgtctttgacaggggaataaggagatatagccaaa 33361261  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 33355783 - 33355736
Alignment:
Q  229 aatgtcgtctttgtcgtactctacatccgccaccgctccacacctttc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33355783 aatgtcgtctttgtcgtactctacatccgccaccgctccacacctttc 33355736  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 33543806 - 33543853
Alignment:
Q  229 aatgtcgtctttgtcgtactctacatccgccaccgctccacacctttc 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33543806 aatgtcgtctttgtcgtactctacatccgccaccgctccacacctttc 33543853  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 33355836 - 33355772
Alignment:
Q  161 ataaccaaaagggtctttgacatagattgatat-----aaccaagctcattacaatgtcgtcttt 220  Q
    |||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||    
T  33355836 ataaccaaaagggtctttgacatagattgatatgatataaccaagctcattacaatgtcgtcttt 33355772  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 36243872 - 36243936
Alignment:
Q  146 ggggaataaggagatataaccaaaagggtctttgacatagattgatataaccaagctcattacaatg 212  Q
    |||||| ||||||||||||||||| |||||||| ||  |||||||||||||||| | ||||||||||    
T  36243872 ggggaacaaggagatataaccaaaggggtcttttac--agattgatataaccaaacccattacaatg 36243936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 23438988 - 23438951
Alignment:
Q  134 atgtctttgacaggggaataaggagatataaccaaaag 171  Q
    |||||||||||| |||||||||||||||| ||||||||    
T  23438988 atgtctttgacatgggaataaggagatatgaccaaaag 23438951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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