View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11785_high_12 (Length: 239)

Name: NF11785_high_12
Description: NF11785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11785_high_12
NF11785_high_12
[»] chr5 (2 HSPs)
chr5 (1-223)||(33361648-33361870)
chr5 (1-223)||(33543150-33543377)
[»] chr2 (1 HSPs)
chr2 (5-124)||(45345501-45345620)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33361648 - 33361870
Alignment:
Q  1 atgcatgcattcaatttaaatttggcacctcacaaacgccaagttgatctcttgatttatggaatacatcaagtgtcaacggtttggtcacaatatcagc 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  33361648 atgcatgcattcaatttaaatttggcacctcacaaactccaagttgatctcttgatttatgaaatacatcaagtgtcaacggtttagtcacaatatcagc 33361747  T
Q  101 tacttgattgcttgtgttacaatgataacatcaactttccaaagataattgctcaatctacttccccaaaactgtggcaatttatgagaagagggttgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33361748 tacttgattgcttgtgttacaatgataacatcaactttccaaagataattgctcaatctacttccccaaaactgtggcaatttatgagaagagggttgtt 33361847  T
Q  201 aattgtataaccacacatataac 223  Q
    ||||||||||||  |||||||||    
T  33361848 aattgtataaccgtacatataac 33361870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33543377 - 33543150
Alignment:
Q  1 atgcatgcattcaatttaaatttg--gcacctcacaaacgccaagttgatctcttgatttatggaatacatcaagtgtcaac---ggtttggtcacaata 95  Q
    ||||||||||||||||||| || |  |||||||| |||| | ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  33543377 atgcatgcattcaatttaatttggcagcacctcagaaactctaagttgatctcttgatttatggaatacatcaagtgtcaacaacggtttggtcacaata 33543278  T
Q  96 tcagctacttgattgcttgtgttacaatgataacatcaactttccaaagataattgctcaatctacttccccaaaactgtggcaatttatgagaagaggg 195  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33543277 tcagctactcgattgcttgtgttacaatgataacatcaactttccaaagataattgctcaatctacttccccaaaaatgtggcaatttatgagaagaggg 33543178  T
Q  196 ttgttaattgtataaccacacatataac 223  Q
    ||||||||||||||||| ||||||||||    
T  33543177 ttgttaattgtataaccgcacatataac 33543150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 45345620 - 45345501
Alignment:
Q  5 atgcattcaatttaaatttggcacctcacaaacgccaagttgatctcttgatttatggaatacatcaagtgtcaacggtttggtcacaatatcagctact 104  Q
    ||||||||| |||||| |||||||||||||||| ||||| ||||||||| |||| ||||| ||||||||| ||||||||||||||| |||||||||||||    
T  45345620 atgcattcagtttaaacttggcacctcacaaactccaagctgatctcttaatttttggaacacatcaagtttcaacggtttggtcataatatcagctact 45345521  T
Q  105 tgattgcttgtgttacaatg 124  Q
    ||||| ||||||||||||||    
T  45345520 tgatttcttgtgttacaatg 45345501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University