View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11785_high_5 (Length: 394)
Name: NF11785_high_5
Description: NF11785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11785_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 84 - 388
Target Start/End: Complemental strand, 27762898 - 27762594
Alignment:
| Q |
84 |
atagttacatgtagataatattcgattcacacaaaagaaatatattcgggtatcaaacacaccaattttatttaatgattttcgaggcgagtgctatttt |
183 |
Q |
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| T |
27762898 |
atagttacatgtagataatattcgattcacacaaaagaaatatattcgggtatcaaacacaccaattttatttaatgattttcgaggcatgtgctatttt |
27762799 |
T |
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| Q |
184 |
ctagatgtttggatacttagacaacaatttaagatagttagatattatagttattgctttgtaacgattaattgattactattttagtaaatcaagtatt |
283 |
Q |
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| T |
27762798 |
ctagatgtttggatacttagacaacaatttaagatagttagatattatagttattgctttgtaacgattaattgattactattttagtaaatcaagtatt |
27762699 |
T |
|
| Q |
284 |
taattggattaaacaaatatcgtgtgttcgcttgagttattaatcaaacacagactatcacatggtaactagagacaaagtcttgttcaaaaaactagtg |
383 |
Q |
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| T |
27762698 |
taattggattaaacaaatatcgtgtgttcgcttgagttattaatcaaacacagactatcacatggtaactagagacaaagtcttgttcaaaaaactagtg |
27762599 |
T |
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| Q |
384 |
acaaa |
388 |
Q |
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||||| |
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| T |
27762598 |
acaaa |
27762594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 27763321 - 27763248
Alignment:
| Q |
12 |
aagaatgctaaatctttgatggtgaactttgtcatccattgcaatcctatctaacttgagagattaatctctat |
85 |
Q |
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||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27763321 |
aagaatgttaaatctttgagagagaactttgtcatccattgcaatcctatctaacttgagagattaatctctat |
27763248 |
T |
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