View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11785_high_8 (Length: 349)
Name: NF11785_high_8
Description: NF11785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11785_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 46 - 343
Target Start/End: Original strand, 30801355 - 30801650
Alignment:
| Q |
46 |
cacgaaagggtaaaaaagtaatgaatagatattaattaattgtgatnnnnnnnnnnttgtgaaaagtttttaactcttcataagtgctgaaaactagtta |
145 |
Q |
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| T |
30801355 |
cacgaaagggtaaaaaagtaatgaatagatattaattaattgtgataaaaaaaa--ttgtgaaaagtttttaactcttcataagtgctgaaaactagtta |
30801452 |
T |
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| Q |
146 |
attttttaggagagtatgaaatacactataaaaagatccaatcgtattcaatttttcacatgaaacgacggaaactatgactgaaactctcaagnnnnnn |
245 |
Q |
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| T |
30801453 |
attttttaggagagtatgaaatacactataaaaagatccaatcgtattcaatttttcacatgaaacgacggaaactatgactgaaactctcaagtttttt |
30801552 |
T |
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| Q |
246 |
natgctatgattctttttctttccttgtttcttatcacaacaaatgttggtggttgtaagccatgttttcatccatttcgaatttccttctctgcttc |
343 |
Q |
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| T |
30801553 |
tatgctatgattctttttctttccttgtttcttatcacaacaaatgttggtggttgtaagccatgttttcatccatttcgaatttccttctttgcttc |
30801650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 102 - 342
Target Start/End: Original strand, 30798753 - 30798994
Alignment:
| Q |
102 |
ttgtgaaaagtttttaactcttcataagtgctgaaaactagtt-aattttttaggagagtatgaaatacactataaaaagatccaatcgtattcaatttt |
200 |
Q |
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| T |
30798753 |
ttgtgaagggtttttaactcttcataagagctaaaaattagtttaatttttttcgagaatatgaaatacactataaaa-gatcaaatcatactctatatt |
30798851 |
T |
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| Q |
201 |
tcaca-tgaaacgacggaaa-ctatgactgaaactctcaagnnnnnnnatgctatgattctttttctttccttgtttcttatcacaacaaatgttggtgg |
298 |
Q |
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| T |
30798852 |
tcacaatgaaa-gacgaaaaactatgattgaaactctcaaatttgtttatgcaatgattctttttctttccttatttcttatcacatcagaagttggtgg |
30798950 |
T |
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| Q |
299 |
ttgtaagccatgttttcatccatttcgaatttccttctctgctt |
342 |
Q |
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| T |
30798951 |
ttgtaagccatattttcatccattttgaatttccttctttgctt |
30798994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 249 - 342
Target Start/End: Original strand, 30805401 - 30805494
Alignment:
| Q |
249 |
gctatgattctttttctttccttgtttcttatcacaacaaatgttggtggttgtaagccatgttttcatccatttcgaatttccttctctgctt |
342 |
Q |
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| T |
30805401 |
gctatgattctttttctttccttctttcttatcgcatcagaagttggtggttgtaagccatgttttcatccatttcaaatttccttctttgctt |
30805494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 235
Target Start/End: Original strand, 30805223 - 30805357
Alignment:
| Q |
102 |
ttgtgaaaagtttttaactcttcataagtgctgaaaactagtta-attttttaggagagtatgaaatacactataaaaagatccaatcgtattcaatttt |
200 |
Q |
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| T |
30805223 |
ttgtgaagggtttttaactcttcataagtgctaaaaattagctagtttttttaggagaatgtgaaatacactat-aaaagatccaatcatattttatatt |
30805321 |
T |
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| Q |
201 |
tcacatgaaacgacg-gaaactatgactgaaactct |
235 |
Q |
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| T |
30805322 |
tcacataaaacgacgaaaaactatgactgaaactct |
30805357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 248 - 342
Target Start/End: Original strand, 30809265 - 30809359
Alignment:
| Q |
248 |
tgctatgattctttttctttccttgtttcttatcacaacaaatgttggtggttgtaagccatgttttcatccatttcgaatttccttctctgctt |
342 |
Q |
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||||||||||| ||| ||||||| ||||||||||||| | | |||||| |||||||| |||||||||||||||||| ||||| ||||| ||||| |
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| T |
30809265 |
tgctatgattcaatttatttccttatttcttatcacaatagaagttggtcgttgtaagtcatgttttcatccatttcaaattttcttctttgctt |
30809359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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