View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11785_low_13 (Length: 218)
Name: NF11785_low_13
Description: NF11785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11785_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 16152848 - 16152990
Alignment:
| Q |
16 |
cataggacagctattgaggaagaatctgactccaagacattcatcactttgcaagtttgtcatcattttcaaatgtctcgtattcattttcaaatgcctc |
115 |
Q |
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| T |
16152848 |
catagtacagctattgaggaagaatctgactccaagacattcatcactttgcaagtttgtcatcattttcaaatgtctcgtattcattttcaaatgcctc |
16152947 |
T |
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| Q |
116 |
aattcaaaaagagttgagatcctcttcatttcctacaataaat |
158 |
Q |
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| T |
16152948 |
aattcaaaaagagttgagatcctctccatttcctacaataaat |
16152990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 16153009 - 16153046
Alignment:
| Q |
160 |
gcaatgtccattgcatacgaaataataaatgtttaatg |
197 |
Q |
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| T |
16153009 |
gcaatgtccattgcatacgaaataataaatgtttaatg |
16153046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 22311666 - 22311712
Alignment:
| Q |
125 |
agagttgagatcctcttcatttcctacaataaatggcaatgtccatt |
171 |
Q |
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| T |
22311666 |
agagttgagatcctcttcatttgctacaataaattgcaatgtccatt |
22311712 |
T |
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