View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11785_low_2 (Length: 595)
Name: NF11785_low_2
Description: NF11785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11785_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 282
Target Start/End: Original strand, 45139856 - 45140121
Alignment:
| Q |
16 |
ctaacaacaagtaaaaattaggttgtcactaatatttttaaactcactttgttttttaaaatatgtgagactttgtttttcttatacatttcatcacgtc |
115 |
Q |
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| T |
45139856 |
ctaacaacaagtaaaaattaggttgtcactattatttttaaactcactttgttttttaaaatatgtgagactttgtttttcttatacatttcatcacgtc |
45139955 |
T |
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| Q |
116 |
tatgattattggattttatttgttactgttaaatggtaggtgatctgaatcattagacattcatactatataagattttatatttggtctaactcgattt |
215 |
Q |
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| T |
45139956 |
tatgattattggattttatgtgttactgttaaatggtaggtgatctgtatcattagacattcataccatataagattttatatttgttctaactcgattt |
45140055 |
T |
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| Q |
216 |
tataaaattaaccattaagattattgatttcactctttataaaaatttaatcatgcatgccttatgt |
282 |
Q |
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| T |
45140056 |
tataaaattaaccattaagattattgatttcactctttat-aaaatttaatcatgcatgccttatgt |
45140121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 277 - 584
Target Start/End: Original strand, 45140428 - 45140735
Alignment:
| Q |
277 |
ttatgtctaatctgtgtaggatttgatttttcagtagnnnnnnnnnnnnnggtcaagcacttataaacttttttattatctaaatgttataaacaatatt |
376 |
Q |
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| T |
45140428 |
ttatgtctaatctgtgtaggatttgatttttcagtagtttttttatttttggtcaagcacttataa----ttttattatctaaatgttatacacaatatt |
45140523 |
T |
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| Q |
377 |
a----atatgttgccttcttatatttgctaattgaggttttgatgagcagttgaaagaatgactaaaaactcaaaaacaacttacggcacaatgagacat |
472 |
Q |
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| T |
45140524 |
aattaatatgttgccttcttatatttgctaattgaggttttgatgagcagttgaaagaatgactaaaaactcaaaaacaacttacggcacaatgagacat |
45140623 |
T |
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| Q |
473 |
taactcaaccagaaaatatgtactagtaagaaagtcatgctctatcatatcatatgtgttcggtttctgatgataaggttatctataagtcgtggtctat |
572 |
Q |
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| T |
45140624 |
taattcaaccagaaaatatgtactagtaagaaagtcatgctctatcatatcatatgtgttcggtttctgatgataaggttatctataagtcgtggtctat |
45140723 |
T |
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| Q |
573 |
atgttctctgct |
584 |
Q |
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| T |
45140724 |
atgttctctgct |
45140735 |
T |
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