View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11785_low_4 (Length: 481)

Name: NF11785_low_4
Description: NF11785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11785_low_4
NF11785_low_4
[»] chr6 (8 HSPs)
chr6 (1-471)||(20086821-20087286)
chr6 (1-471)||(20128549-20129030)
chr6 (1-471)||(22203840-22204321)
chr6 (414-468)||(18997635-18997689)
chr6 (78-220)||(34905334-34905480)
chr6 (28-72)||(8504535-8504579)
chr6 (34-72)||(29286036-29286074)
chr6 (40-72)||(2831425-2831457)
[»] scaffold0264 (1 HSPs)
scaffold0264 (393-471)||(16770-16848)
[»] scaffold0074 (1 HSPs)
scaffold0074 (414-471)||(47099-47156)
[»] scaffold0007 (1 HSPs)
scaffold0007 (414-471)||(4611-4668)
[»] chr3 (8 HSPs)
chr3 (90-186)||(22604570-22604666)
chr3 (81-220)||(20493481-20493624)
chr3 (78-186)||(40715936-40716044)
chr3 (116-220)||(18427186-18427294)
chr3 (81-183)||(37776780-37776882)
chr3 (81-159)||(45515596-45515674)
chr3 (78-156)||(54140997-54141075)
chr3 (30-71)||(47849976-47850017)
[»] chr1 (8 HSPs)
chr1 (111-232)||(41958114-41958239)
chr1 (89-185)||(26980337-26980433)
chr1 (248-296)||(41884708-41884756)
chr1 (78-159)||(41095710-41095791)
chr1 (248-296)||(1035592-1035640)
chr1 (248-296)||(8644782-8644830)
chr1 (40-72)||(31635508-31635540)
chr1 (121-206)||(33193091-33193180)
[»] chr4 (6 HSPs)
chr4 (78-206)||(24834576-24834708)
chr4 (90-183)||(50164405-50164498)
chr4 (121-185)||(33653564-33653628)
chr4 (78-206)||(8108954-8109086)
chr4 (30-72)||(27918388-27918430)
chr4 (40-72)||(45249952-45249984)
[»] chr8 (5 HSPs)
chr8 (128-183)||(17741604-17741659)
chr8 (121-220)||(34861228-34861326)
chr8 (40-72)||(8867249-8867281)
chr8 (40-72)||(34576755-34576787)
chr8 (248-296)||(45244703-45244751)
[»] chr7 (5 HSPs)
chr7 (81-183)||(46517294-46517394)
chr7 (81-183)||(31502541-31502643)
chr7 (34-71)||(37929166-37929203)
chr7 (248-296)||(32786814-32786862)
chr7 (40-72)||(32786857-32786889)
[»] chr5 (4 HSPs)
chr5 (88-183)||(34384768-34384863)
chr5 (40-72)||(10197053-10197085)
chr5 (248-296)||(41144670-41144718)
chr5 (1-29)||(41630131-41630159)
[»] chr2 (1 HSPs)
chr2 (40-72)||(41890048-41890080)


Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 20087286 - 20086821
Alignment:
Q  1 tgcatatattatgcattgtccctatcaatattgaaaattataatattttaatttttaagaagttgaatgcactactaagaaatgttagcaacacttactt 100  Q
    |||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20087286 tgcatatattatacattgtcc-taccaatattgaaaattataatattttaatttttaagaagttgaatgcactactaaaaaatgttagcaacacttactt 20087188  T
Q  101 tttt-acactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttcaaaatgcccacaataattt 199  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20087187 tttttagactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaatttttaaaatgcccacaataattt 20087088  T
Q  200 aaacc-aacaaaggagtgagtactaaaaagagtgatgctagtgttactcatgcatgactttttatatgtatgtttat---ataatgagttcattaacatg 295  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||       |||||||||||||||||||||||   ||||||||||||||||||||    
T  20087087 aaaccaaacaaaggagtgagtactaaagagagtgatgctagtgttac-------tgactttttatatgtatgtttatataataatgagttcattaacatg 20086995  T
Q  296 tacagctgacgctgagggtataagttaagacttgtctctattagtagactccataaacaccattcatcaaatcaaacaaacacattctctcctctgtttt 395  Q
    |  ||||||| |  |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||    
T  20086994 t--agctgaccccaagggtataagttaagacttgtctctactagtagactcgataaacaccattcatcaaatcaaataaacacattatctcctctgtttt 20086897  T
Q  396 tcagttagactcgataaacaaaatccatggcttactctaaaattctctttttcttaatccttattcgattcctttg 471  Q
    ||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  20086896 tcaattagactcgataaacaaaatccatggcttactctagaattctctttttctcaatccttattcgattcctttg 20086821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 20129030 - 20128549
Alignment:
Q  1 tgcatatattatgcattgtccctatcaatattgaaaattataatattttaatttttaagaagttgaatgcactactaagaaatgttagcaacacttactt 100  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  20129030 tgcatatattatgcattgtttctaccaatattgaaaattataatattttaatttttaagaagttgaatgcactactaaggaatgctagcaacacttactt 20128931  T
Q  101 ttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatca-ttttgtaagagttcaattttcaaaatgcccacaataattt 199  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||  ||| |||||||||||||||| |||||||||    
T  20128930 ttttacattttctcaaacagtcactcatttatttggtgaaatcaatgtatgtcccatcatttttgtaatggtttaattttcaaaatgcccccaataattt 20128831  T
Q  200 aaaccaacaaaggagtgagtactaaaaagagtgatgctagtgttactcatgcatgactttttatatgtatgtttatataatgagttcattaacatgtaca 299  Q
    ||||||| || ||||||||||||||| |||||||||||||  ||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||||     
T  20128830 aaaccaataagggagtgagtactaaagagagtgatgctagaattactcatgcacgactttttata-atatgtttctataatgagttcattaacatgtact 20128732  T
Q  300 gctgacgctgagggtataagttaagacttgtctctattagta------------gactccataaacaccattcatcaaatcaaacaaacacattctctcc 387  Q
    |||| ||||||||||| ||||||||| ||||||||||| |||             |   |||||||||||||||||||||||||||||||||||||||||    
T  20128731 gctggcgctgagggtagaagttaagatttgtctctatt-gtatttcctttgtgccataacataaacaccattcatcaaatcaaacaaacacattctctcc 20128633  T
Q  388 tctgtttttcagttagactcgataaacaaaatccatggcttactctaaaattctctttttcttaatccttattcgattcctttg 471  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20128632 tctgtttttcaattagactcgataaacaaaatccatggcttactctaaaattctctttttcttaatccttattcgattcctttg 20128549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 22203840 - 22204321
Alignment:
Q  1 tgcatatattatgcattgtccctatcaatattgaaaattataatattttaatttttaagaagttgaatgcactactaagaaatgttagcaacacttactt 100  Q
    |||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  22203840 tgcatatattatgcattgtttctaccaatattgaaaattataatattttaatttttaagaagttgaatgcactactaaggaatgctagcaacacttactt 22203939  T
Q  101 ttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatca-ttttgtaagagttcaattttcaaaatgcccacaataattt 199  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||  ||| |||||||||||||||| |||||||||    
T  22203940 ttttacattttctcaaacagtcactcatttatttggtgaaatcaatgtatgtcccatcatttttgtaatggtttaattttcaaaatgcccccaataattt 22204039  T
Q  200 aaaccaacaaaggagtgagtactaaaaagagtgatgctagtgttactcatgcatgactttttatatgtatgtttatataatgagttcattaacatgtaca 299  Q
    ||||||| || ||||||||||||||| |||||||||||||  ||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||||     
T  22204040 aaaccaataagggagtgagtactaaagagagtgatgctagaattactcatgcacgactttttata-atatgtttctataatgagttcattaacatgtact 22204138  T
Q  300 gctgacgctgagggtataagttaagacttgtctctattagta------------gactccataaacaccattcatcaaatcaaacaaacacattctctcc 387  Q
    |||| ||||||||||| ||||||||| ||||||||||| |||             |   |||||||||||||||||||||||||||||||||||||||||    
T  22204139 gctggcgctgagggtagaagttaagatttgtctctatt-gtatttcctttgtgccataacataaacaccattcatcaaatcaaacaaacacattctctcc 22204237  T
Q  388 tctgtttttcagttagactcgataaacaaaatccatggcttactctaaaattctctttttcttaatccttattcgattcctttg 471  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22204238 tctgtttttcaattagactcgataaacaaaatccatggcttactctaaaattctctttttcttaatccttattcgattcctttg 22204321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 414 - 468
Target Start/End: Complemental strand, 18997689 - 18997635
Alignment:
Q  414 caaaatccatggcttactctaaaattctctttttcttaatccttattcgattcct 468  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18997689 caaaatccatggcttactctaaaattctctttttctcaatccttattcgattcct 18997635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 34905334 - 34905480
Alignment:
Q  78 agaaatgttagcaacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaatt 177  Q
    ||||||| |||||||||| | ||||  ||||| |||| |||| |||||| |||||| | |||||||| ||||| ||||| || |||||  | ||||||||    
T  34905334 agaaatgctagcaacactcatttttcaacactctctctaacactcactcttttattggatgaaatcaatgtatgtcccaccactttgtttgggttcaatt 34905433  T
Q  178 ttcaaaatg----cccacaataatttaaaccaacaaaggagtgagta 220  Q
    |||||| ||    |||||||| ||||||||||| ||  |||||||||    
T  34905434 ttcaaagtgtagacccacaatgatttaaaccaataagagagtgagta 34905480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 8504579 - 8504535
Alignment:
Q  28 atattgaaaattataatattttaatttttaagaagttgaatgcac 72  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||    
T  8504579 atattgaaaaatataatattttaatttttaagaaattgaatgcac 8504535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 72
Target Start/End: Complemental strand, 29286074 - 29286036
Alignment:
Q  34 aaaattataatattttaatttttaagaagttgaatgcac 72  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  29286074 aaaaatataatattttaaattttaagaagttgaatgcac 29286036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 2831457 - 2831425
Alignment:
Q  40 ataatattttaatttttaagaagttgaatgcac 72  Q
    |||| ||||||||||||||||||||||||||||    
T  2831457 ataacattttaatttttaagaagttgaatgcac 2831425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 393 - 471
Target Start/End: Complemental strand, 16848 - 16770
Alignment:
Q  393 ttttcagttagactcgataaacaaaatccatggcttactctaaaattctctttttcttaatccttattcgattcctttg 471  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||    
T  16848 ttttcaattagactcgataaacaaaatccatggcttactttaaaattatctttttctcaatccttattcgattcctttg 16770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 414 - 471
Target Start/End: Original strand, 47099 - 47156
Alignment:
Q  414 caaaatccatggcttactctaaaattctctttttcttaatccttattcgattcctttg 471  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  47099 caaaatccatggcttactctaaaattctctttctctcaatccttattcgattcctttg 47156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 414 - 471
Target Start/End: Original strand, 4611 - 4668
Alignment:
Q  414 caaaatccatggcttactctaaaattctctttttcttaatccttattcgattcctttg 471  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||    
T  4611 caaaatccatggcttactctaaaattctctttctctcaatccttattcgattcttttg 4668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 22604570 - 22604666
Alignment:
Q  90 aacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttcaaaatg 186  Q
    |||||||||||||| | ||| |||  |||| ||||||||||||| | | |||| | ||||| ||||| ||||||||  |||||||||||||||||||    
T  22604570 aacacttactttttaatactctctttaacactcactcatttattggataaaattaatgtatgtcccaccattttgtgggagttcaattttcaaaatg 22604666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 220
Target Start/End: Complemental strand, 20493624 - 20493481
Alignment:
Q  81 aatgttagcaacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttc 180  Q
    |||| |||||||||| ||||||  ||||| |||| |||| ||||||||||||| | |||||||| ||||| ||| | || |||||  | ||||||| |||    
T  20493624 aatgctagcaacactcacttttcaacactctctctaacactcactcatttattggatgaaatcaatgtatgtcctaccactttgtgggggttcaatattc 20493525  T
Q  181 aaaatg----cccacaataatttaaaccaacaaaggagtgagta 220  Q
    ||| ||    |||||||| ||||||||||| ||  |||||||||    
T  20493524 aaagtgtagacccacaatgatttaaaccaataagagagtgagta 20493481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 78 - 186
Target Start/End: Complemental strand, 40716044 - 40715936
Alignment:
Q  78 agaaatgttagcaacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaatt 177  Q
    |||||||||||||||||| ||||||  ||||| |||| | || |||||| ||||| ||||||||| | |||||  | ||||| |||||  | ||||||||    
T  40716044 agaaatgttagcaacactcacttttcaacactctctctagcactcactcttttatatggtgaaattaatgtatgactcatcactttgtgtgggttcaatt 40715945  T
Q  178 ttcaaaatg 186  Q
    || ||||||    
T  40715944 tttaaaatg 40715936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 220
Target Start/End: Complemental strand, 18427294 - 18427186
Alignment:
Q  116 aacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttcaaaatg----cccacaataatttaaaccaacaaag 211  Q
    |||| ||||||||||||| | |||||||| ||||| ||||| ||||||||  | |||| ||||||||| ||    |||||||| ||||||||||| ||      
T  18427294 aacactcactcatttattggatgaaatcaatgtatgtcccaccattttgtgtgggttctattttcaaagtgtagacccacaatgatttaaaccaataaga 18427195  T
Q  212 gagtgagta 220  Q
    |||||||||    
T  18427194 gagtgagta 18427186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 37776882 - 37776780
Alignment:
Q  81 aatgttagcaacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttc 180  Q
    |||| |||||||||| ||||||  |||||||||| | || |||||| |||||| | |||||||| ||||| ||| | || |||||  | |||||||||||    
T  37776882 aatgctagcaacactcacttttcaacactttctccagcactcactcttttattagatgaaatcaatgtatgtcctaccactttgtgtgggttcaattttc 37776783  T
Q  181 aaa 183  Q
    |||    
T  37776782 aaa 37776780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 45515674 - 45515596
Alignment:
Q  81 aatgttagcaacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatca 159  Q
    ||||||| |||| || ||||||| ||||| |||| |||| |||||  |||||| | |||||||| ||||||||||||||    
T  45515674 aatgttaacaacgctcactttttaacactctctccaacactcactattttattggatgaaatcaatgtatatcccatca 45515596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 54141075 - 54140997
Alignment:
Q  78 agaaatgttagcaacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatccca 156  Q
    |||||||||| |||||||| |||||   |||| |||| | || ||||||||||||| |||||||||| ||||| |||||    
T  54141075 agaaatgttaacaacactttcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgtatgtccca 54140997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 47849976 - 47850017
Alignment:
Q  30 attgaaaattataatattttaatttttaagaagttgaatgca 71  Q
    |||||||| |||||||||||||||||||| |||| |||||||    
T  47849976 attgaaaaatataatattttaatttttaaaaagtcgaatgca 47850017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 41958114 - 41958239
Alignment:
Q  111 tctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttcaaaatg----cccacaataatttaaaccaa 206  Q
    |||||| || ||||||||||||| | |||||||| ||||| ||||| ||||||||  | |||||||||||||| ||    |||||| | |||||||||||    
T  41958114 tctcaagcactcactcatttattggatgaaatcaatgtatgtcccaccattttgtgggggttcaattttcaaagtgtagacccacagtgatttaaaccaa 41958213  T
Q  207 caaaggagtgagtactaaaaagagtg 232  Q
     ||  ||||||||| || ||||||||    
T  41958214 taagagagtgagtattagaaagagtg 41958239  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 26980433 - 26980337
Alignment:
Q  89 caacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttcaaaat 185  Q
    ||||||| ||||||  ||||| |||| || | ||||||  ||||| | |||||||| ||||| ||||| ||||||||  ||||||||||||||||||    
T  26980433 caacactcacttttcaacactctctctaatactcactctattattggatgaaatcaatgtatgtcccaccattttgtgtgagttcaattttcaaaat 26980337  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 41884708 - 41884756
Alignment:
Q  248 atgcatgactttttatatgtatgtttatataatgagttcattaacatgt 296  Q
    ||||||||||||| |||||||||||| |||||||||||  |||||||||    
T  41884708 atgcatgacttttgatatgtatgtttctataatgagttacttaacatgt 41884756  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 41095791 - 41095710
Alignment:
Q  78 agaaatgttagcaacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatca 159  Q
    ||||||| ||||||||||  |||||   |||| |||| | || ||||||||||||| |||||||||| ||||| ||||||||    
T  41095791 agaaatgctagcaacactctcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgtatgtcccatca 41095710  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 1035640 - 1035592
Alignment:
Q  248 atgcatgactttttatatgtatgtttatataatgagttcattaacatgt 296  Q
    ||||| ||||||| |||||||| ||| |||||||||||| |||||||||    
T  1035640 atgcaagacttttgatatgtatatttctataatgagttccttaacatgt 1035592  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 8644782 - 8644830
Alignment:
Q  248 atgcatgactttttatatgtatgtttatataatgagttcattaacatgt 296  Q
    ||||||||||||| || ||||| ||| ||||||||||| ||||||||||    
T  8644782 atgcatgacttttaatgtgtatatttctataatgagtttattaacatgt 8644830  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 31635540 - 31635508
Alignment:
Q  40 ataatattttaatttttaagaagttgaatgcac 72  Q
    |||||||||||| ||||||||||||||||||||    
T  31635540 ataatattttaacttttaagaagttgaatgcac 31635508  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 33193091 - 33193180
Alignment:
Q  121 tcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttcaaaatg----cccacaataatttaaaccaa 206  Q
    ||||| ||||||| | |||||||| ||||| | ||| |||||||| || |||||||||||||| ||    |||||||| |||||||||||    
T  33193091 tcacttatttattggatgaaatcaatgtatgtgccaccattttgtgagggttcaattttcaaagtgtagacccacaatgatttaaaccaa 33193180  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 24834576 - 24834708
Alignment:
Q  78 agaaatgttagcaacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaatt 177  Q
    ||||||| |||||||||| ||||||| ||||| |||| |||  ||||   |||||| | || ||||| ||||| ||||| ||||||||  | ||||||||    
T  24834576 agaaatgctagcaacactcactttttgacactctctctaacgctcacatttttattggatggaatcaatgtatgtcccaccattttgtgtgggttcaatt 24834675  T
Q  178 ttcaaaatg----cccacaataatttaaaccaa 206  Q
    |||||| ||    ||||||||||||||||||||    
T  24834676 ttcaaagtgtagacccacaataatttaaaccaa 24834708  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 183
Target Start/End: Original strand, 50164405 - 50164498
Alignment:
Q  90 aacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttcaaa 183  Q
    |||||| ||||||| ||||| |||| | || ||||||||||||| | | |||||| ||||| ||||| ||||||||  | ||||||||||||||    
T  50164405 aacactcactttttaacactctctctagcactcactcatttattggataaaatcaatgtatctcccaccattttgtgggggttcaattttcaaa 50164498  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 33653628 - 33653564
Alignment:
Q  121 tcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttcaaaat 185  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||  |  |||||||||||||||    
T  33653628 tcactcatttatttgatgaaatcaatgtatgtcccaccattttgtggggtttcaattttcaaaat 33653564  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 206
Target Start/End: Original strand, 8108954 - 8109086
Alignment:
Q  78 agaaatgttagcaacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaatt 177  Q
    ||||||| |||||||||| ||||||  ||||| |||| | || |||||| |||||| |||||||||| ||||| |||||  | |||||    ||||||||    
T  8108954 agaaatgctagcaacactcacttttcaacactctctctagcactcactcttttattgggtgaaatcaatgtatgtcccactaatttgtgtttgttcaatt 8109053  T
Q  178 ttcaaaatg----cccacaataatttaaaccaa 206  Q
    |||||| ||    |||||||| |||||||||||    
T  8109054 ttcaaagtgtagacccacaatgatttaaaccaa 8109086  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 27918388 - 27918430
Alignment:
Q  30 attgaaaattataatattttaatttttaagaagttgaatgcac 72  Q
    |||||||| ||||||||||||| |||||||||||| |||||||    
T  27918388 attgaaaaatataatattttaacttttaagaagtttaatgcac 27918430  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 45249952 - 45249984
Alignment:
Q  40 ataatattttaatttttaagaagttgaatgcac 72  Q
    |||||||||||| ||||||||||||||||||||    
T  45249952 ataatattttaaattttaagaagttgaatgcac 45249984  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 183
Target Start/End: Complemental strand, 17741659 - 17741604
Alignment:
Q  128 tttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttcaaa 183  Q
    |||||| | |||||||| ||||| ||||| |||||||| |||||||||||||||||    
T  17741659 tttattggatgaaatcaatgtatgtcccaccattttgtgagagttcaattttcaaa 17741604  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 220
Target Start/End: Complemental strand, 34861326 - 34861228
Alignment:
Q  121 tcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttcaaaatgcccacaataatttaaaccaacaaaggagtgagta 220  Q
    |||||| |||||| | |||||||| ||||| ||||| || |||||    |||||||||||||| | |||||||||||||||||||| ||  |||||||||    
T  34861326 tcactcttttattggatgaaatcaatgtatgtcccaccactttgtgtaggttcaattttcaaagt-cccacaataatttaaaccaataagagagtgagta 34861228  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 8867281 - 8867249
Alignment:
Q  40 ataatattttaatttttaagaagttgaatgcac 72  Q
    |||| ||||||||||||||||||||||||||||    
T  8867281 ataacattttaatttttaagaagttgaatgcac 8867249  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 34576787 - 34576755
Alignment:
Q  40 ataatattttaatttttaagaagttgaatgcac 72  Q
    ||||||| |||||||||||||||||||||||||    
T  34576787 ataatatgttaatttttaagaagttgaatgcac 34576755  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 45244751 - 45244703
Alignment:
Q  248 atgcatgactttttatatgtatgtttatataatgagttcattaacatgt 296  Q
    ||||| ||||||| ||| |||| ||| ||||||||||||||||||||||    
T  45244751 atgcacgacttttaatacgtatatttctataatgagttcattaacatgt 45244703  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 46517294 - 46517394
Alignment:
Q  81 aatgttagcaacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttc 180  Q
    |||| |||||||||| ||||||| ||||| |||  | || ||||||||||||| | | |||||| ||||||||||| |||| |||  | |||||||||||    
T  46517294 aatgctagcaacactcactttttaacactctct--agcactcactcatttattggataaaatcaatgtatatcccaccattctgtgggggttcaattttc 46517391  T
Q  181 aaa 183  Q
    |||    
T  46517392 aaa 46517394  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 31502643 - 31502541
Alignment:
Q  81 aatgttagcaacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttc 180  Q
    |||| |||||||||| ||||||  ||| | |||| |||| |||||| |||||| | ||||||||  |||| ||||| ||||||||  | |||||||||||    
T  31502643 aatgctagcaacactcacttttcaacagtctctctaacactcactcttttattggatgaaatcaaggtatgtcccaccattttgtgtgcgttcaattttc 31502544  T
Q  181 aaa 183  Q
    |||    
T  31502543 aaa 31502541  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 37929166 - 37929203
Alignment:
Q  34 aaaattataatattttaatttttaagaagttgaatgca 71  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  37929166 aaaatcataatattttaatttttaaaaagttgaatgca 37929203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 32786862 - 32786814
Alignment:
Q  248 atgcatgactttttatatgtatgtttatataatgagttcattaacatgt 296  Q
    ||||| ||||||| ||| |||| |||||||||||||||| |||||||||    
T  32786862 atgcacgacttttgatacgtatatttatataatgagttccttaacatgt 32786814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 32786889 - 32786857
Alignment:
Q  40 ataatattttaatttttaagaagttgaatgcac 72  Q
    |||||||||||| ||||||||||||||||||||    
T  32786889 ataatattttaacttttaagaagttgaatgcac 32786857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 183
Target Start/End: Complemental strand, 34384863 - 34384768
Alignment:
Q  88 gcaacacttacttttttacactttctcaaacagtcactcatttatttggtgaaatcagtgtatatcccatcattttgtaagagttcaattttcaaa 183  Q
    ||||| || ||||||| | |||||||  |||| ||| || |||||| |||||||||| ||||| |||||  |||||||  ||||||||||||||||    
T  34384863 gcaacgctcactttttaatactttctttaacactcattcttttattgggtgaaatcaatgtatgtcccactattttgtgtgagttcaattttcaaa 34384768  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 10197085 - 10197053
Alignment:
Q  40 ataatattttaatttttaagaagttgaatgcac 72  Q
    |||||||||||| ||||||||||||||||||||    
T  10197085 ataatattttaacttttaagaagttgaatgcac 10197053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 248 - 296
Target Start/End: Original strand, 41144670 - 41144718
Alignment:
Q  248 atgcatgactttttatatgtatgtttatataatgagttcattaacatgt 296  Q
    ||||| ||||||| |||||||| ||| |||||||||||| |||||||||    
T  41144670 atgcacgacttttgatatgtatatttctataatgagttccttaacatgt 41144718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 41630131 - 41630159
Alignment:
Q  1 tgcatatattatgcattgtccctatcaat 29  Q
    |||||||||||||||||||||||||||||    
T  41630131 tgcatatattatgcattgtccctatcaat 41630159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 72
Target Start/End: Original strand, 41890048 - 41890080
Alignment:
Q  40 ataatattttaatttttaagaagttgaatgcac 72  Q
    |||| ||||||||||||||||||||||||||||    
T  41890048 ataacattttaatttttaagaagttgaatgcac 41890080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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