View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11785_low_6 (Length: 378)
Name: NF11785_low_6
Description: NF11785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11785_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 50 - 289
Target Start/End: Original strand, 16152731 - 16152970
Alignment:
| Q |
50 |
ttattggtgtcgacatgtcagtgtcgtatccggtgttgcatttcatattttatgaataatgtatctacttacatgaattaatcttcctgatcctaagtca |
149 |
Q |
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| T |
16152731 |
ttattggtgtcgacatgtcagtgtcgtgtccgatgttgcatttcatattttattaataatgtatctacttacatgaattaatcttcctgatcctaagtca |
16152830 |
T |
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| Q |
150 |
aaggtgaggagatccaacataggacagctattgaggaagaagaggactccaagaaatgcatcactgtgaaagtttgtcagaaggggcaaatgtagaggag |
249 |
Q |
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| T |
16152831 |
aaggtgaggagctccaacatagtacagctattgaggaagaatctgactccaagacattcatcactttgcaagtttgtcatcattttcaaatgtctcgtat |
16152930 |
T |
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| Q |
250 |
tcattttaaaaggactcaattaaaaaagagttgagatcct |
289 |
Q |
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| T |
16152931 |
tcattttcaaatgcctcaattcaaaaagagttgagatcct |
16152970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 97
Target Start/End: Original strand, 16151847 - 16151894
Alignment:
| Q |
50 |
ttattggtgtcgacatgtcagtgtcgtatccggtgttgcatttcatat |
97 |
Q |
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| T |
16151847 |
ttattggtgtcgacatatcagtgtcgtgtccggtgttgcatttcatat |
16151894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 16151995 - 16152038
Alignment:
| Q |
11 |
cataggttatgaataatgtatcaccaaaatataatacacttatt |
54 |
Q |
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| T |
16151995 |
cataggttatgaataatgtatcaccaaaaaataatacacttatt |
16152038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 97
Target Start/End: Complemental strand, 14223047 - 14223000
Alignment:
| Q |
50 |
ttattggtgtcgacatgtcagtgtcgtatccggtgttgcatttcatat |
97 |
Q |
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| T |
14223047 |
ttattggtgtcgacatatcagtgtcgtgtcaggtgttgcatttcatat |
14223000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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