View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11785_low_9 (Length: 316)

Name: NF11785_low_9
Description: NF11785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11785_low_9
NF11785_low_9
[»] chr8 (6 HSPs)
chr8 (92-294)||(9510659-9510861)
chr8 (92-277)||(6245007-6245206)
chr8 (2-94)||(9511000-9511092)
chr8 (15-97)||(6245342-6245424)
chr8 (4-70)||(5584936-5585002)
chr8 (19-67)||(35029467-35029515)
[»] chr1 (10 HSPs)
chr1 (2-237)||(5808642-5808891)
chr1 (165-294)||(26510505-26510634)
chr1 (18-94)||(1248431-1248507)
chr1 (19-94)||(34352641-34352716)
chr1 (35-94)||(3544964-3545023)
chr1 (92-155)||(26510418-26510481)
chr1 (28-94)||(13867671-13867737)
chr1 (28-94)||(45795442-45795508)
chr1 (221-282)||(33150870-33150931)
chr1 (15-48)||(26510215-26510248)
[»] chr3 (8 HSPs)
chr3 (15-94)||(34829637-34829716)
chr3 (182-292)||(34829284-34829394)
chr3 (35-94)||(31675148-31675207)
chr3 (35-94)||(31921213-31921272)
chr3 (100-155)||(34829435-34829490)
chr3 (28-94)||(40513562-40513628)
chr3 (4-70)||(22734550-22734616)
chr3 (17-69)||(10867965-10868017)
[»] chr4 (6 HSPs)
chr4 (220-294)||(27300028-27300102)
chr4 (28-94)||(43516586-43516652)
chr4 (15-91)||(20544305-20544381)
chr4 (19-66)||(43273656-43273703)
chr4 (221-282)||(20543960-20544021)
chr4 (17-69)||(52617709-52617761)
[»] chr2 (5 HSPs)
chr2 (17-94)||(7300893-7300970)
chr2 (15-94)||(11196569-11196648)
chr2 (35-69)||(15017919-15017953)
chr2 (221-282)||(32624229-32624290)
chr2 (92-152)||(11196370-11196430)
[»] chr5 (7 HSPs)
chr5 (35-94)||(476431-476490)
chr5 (17-74)||(42039550-42039607)
chr5 (19-70)||(23923091-23923142)
chr5 (38-69)||(587759-587790)
chr5 (228-282)||(21368129-21368183)
chr5 (99-140)||(15862708-15862749)
chr5 (13-70)||(18891746-18891803)
[»] scaffold0043 (1 HSPs)
scaffold0043 (35-92)||(34472-34529)
[»] scaffold0555 (1 HSPs)
scaffold0555 (35-94)||(7886-7945)
[»] chr6 (2 HSPs)
chr6 (35-94)||(14844000-14844059)
chr6 (28-70)||(18588594-18588636)
[»] chr7 (3 HSPs)
chr7 (19-67)||(47923940-47923988)
chr7 (17-67)||(30573187-30573237)
chr7 (18-58)||(15124677-15124717)
[»] scaffold0112 (1 HSPs)
scaffold0112 (39-69)||(15517-15547)


Alignment Details
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 92 - 294
Target Start/End: Complemental strand, 9510861 - 9510659
Alignment:
Q  92 tgccgctaaaggtttctatctttgcttggcggttgttgcgagacaggttttcgactaagaataagtgtgatcgatactgaagcagtgttatgtgttgcag 191  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  9510861 tgccgttaaaggtttctatctttgcttgacggttgttgcgagacaggttgtcgactaagaataagcgtgatcgatactgaagcagcgttatgtgttgcag 9510762  T
Q  192 gttggggcatggaagagtctgcgacacacttatttcttcattgcgccactttcgacacattgtggcatcatatcaggtgttggatcggaataccaggtgt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||    
T  9510761 gttggggcatggaagagtctgcgacacacttatttcttcattgcgccactttcagtacattgtggcatcatatcaggtgttggatcggaataccaggtgt 9510662  T
Q  292 tga 294  Q
    |||    
T  9510661 tga 9510659  T

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Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 92 - 277
Target Start/End: Complemental strand, 6245206 - 6245007
Alignment:
Q  92 tgccgctaaaggtttctatctttgcttggcggttgttgcgagacaggttttcgactaagaataa--------------gtgtgatcgatactgaagcagt 177  Q
    |||| |||||||||||||||||||||||||| ||| ||||||| |||||   ||||||||||||              | ||||||||| |||||||||     
T  6245206 tgccactaaaggtttctatctttgcttggcgattgatgcgagataggttgctgactaagaataatcttctgaggcgcggcgtgatcgatgctgaagcagc 6245107  T
Q  178 gttatgtgttgcaggttggggcatggaagagtctgcgacacacttatttcttcattgcgccactttcgacacattgtggcatcatatcaggtgttggatc 277  Q
    |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  6245106 gttatgtgttgcaggttgcggcatggaagagtccacgacacacttatttcttcattgcgccactttcggtacattgtggcatcatatcaggtgttggatc 6245007  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 94
Target Start/End: Complemental strand, 9511092 - 9511000
Alignment:
Q  2 gtggagtagcatagggttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    |||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  9511092 gtggagaagcgtggggttggaggagaaggttgagggtgtgggaggaggagatgttagaggagtgtaggcaattgcttaatggtgttgttttgc 9511000  T

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Target: chr8; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 6245424 - 6245342
Alignment:
Q  15 gggttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgccgc 97  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||    
T  6245424 gggttggaggagaaggttgagggtgtgggaggaggagatgttagatgagtgtaggtaattacttaatggtgttgttttgccgc 6245342  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 5585002 - 5584936
Alignment:
Q  4 ggagtagcatagggttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggt 70  Q
    |||| ||| |||| ||||||||| ||||||  |||||||||| |||| ||||||| |||||||||||    
T  5585002 ggagaagcttaggtttggaggaggaggttgttggtgtgggagaaggagatgttagcggagtgtaggt 5584936  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 35029515 - 35029467
Alignment:
Q  19 tggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgta 67  Q
    ||||||||  ||||| |||||||||||||||| ||||||| ||||||||    
T  35029515 tggaggagggggttgtgggtgtgggaggaggagatgttaggggagtgta 35029467  T

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Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 2 - 237
Target Start/End: Complemental strand, 5808891 - 5808642
Alignment:
Q  2 gtggagtagcatagggttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgccgctaaa 101  Q
    |||||| ||| | ||||||||||||||||||| ||||||| |||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  5808891 gtggagaagcgtggggttggaggagaaggttgggggtgtgcgaggaggagatgttaaaggagtgtaggcaattgcttaatggtgttgttttgccgctaaa 5808792  T
Q  102 ggtttctatctttgcttggcggttgttgcgagacaggttttcgactaagaataa--------------gtgtgatcgatactgaagcagtgttatgtgtt 187  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||              | |||||||||  ||||| || ||||||||||    
T  5808791 ggtttctatctttgcttggcggttgttgcgagacaggttgccgactaagaataatcttctgaggcgcggcgtgatcgatgttgaagtagcgttatgtgtt 5808692  T
Q  188 gcaggttggggcatggaagagtctgcgacacacttatttcttcattgcgc 237  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||||    
T  5808691 gcaggttgcggcatgaaagagtctacgacacacttatttcttcattgcgc 5808642  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 165 - 294
Target Start/End: Original strand, 26510505 - 26510634
Alignment:
Q  165 atactgaagcagtgttatgtgttgcaggttggggcatggaagagtctgcgacacacttatttcttcattgcgccactttcgacacattgtggcatcatat 264  Q
    |||| ||||||||  | |||||| |||| || |||| ||||||||||||| | ||||| ||| ||||||| |||| |||||  |||||||||||||||||    
T  26510505 ataccgaagcagttatgtgtgttacaggatgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccattttcggtacattgtggcatcatat 26510604  T
Q  265 caggtgttggatcggaataccaggtgttga 294  Q
    ||||| ||||||||||||  ||||||||||    
T  26510605 caggtcttggatcggaatgtcaggtgttga 26510634  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 1248431 - 1248507
Alignment:
Q  18 ttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    ||||||||||   ||| |||| |||||||||||  ||||||||||||||||| |||| |||||||||||||||||||    
T  1248431 ttggaggagacctttgtgggtatgggaggaggagctgttagaggagtgtaggcaattacttaatggtgttgttttgc 1248507  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 34352716 - 34352641
Alignment:
Q  19 tggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    |||||| | ||||||||||||||||||||||| ||| |||||||||||||| ||||   ||||||||| |||||||    
T  34352716 tggaggcgtaggttgagggtgtgggaggaggagatgctagaggagtgtaggcaattaactaatggtgtcgttttgc 34352641  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 3544964 - 3545023
Alignment:
Q  35 gggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    ||||||||||||||||  || |||| ||||||||| |||| |||||||||||||||||||    
T  3544964 gggtgtgggaggaggagttggtagaagagtgtaggcaattacttaatggtgttgttttgc 3545023  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 155
Target Start/End: Original strand, 26510418 - 26510481
Alignment:
Q  92 tgccgctaaaggtttctatctttgcttggcggttgttgcgagacaggttttcgactaagaataa 155  Q
    ||||||| ||||| || ||||||||||| ||||||||||| ||||||||  |||||||||||||    
T  26510418 tgccgctgaaggtctccatctttgcttgacggttgttgcgggacaggttgccgactaagaataa 26510481  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 13867671 - 13867737
Alignment:
Q  28 aggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    ||||| ||||||||||||||||||||| ||||||||||||||   ||  |||||||||| |||||||    
T  13867671 aggttaagggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgttttgc 13867737  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 45795508 - 45795442
Alignment:
Q  28 aggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    ||||| ||||||||||||||||||||| ||||||||||||||   ||  |||||||||| |||||||    
T  45795508 aggttaagggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgttttgc 45795442  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 33150931 - 33150870
Alignment:
Q  221 ttatttcttcattgcgccactttcgacacattgtggcatcatatcaggtgttggatcggaat 282  Q
    |||||| |||| ||||||||||| | | |||||||||||| |||||||| ||||||||||||    
T  33150931 ttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaat 33150870  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 26510215 - 26510248
Alignment:
Q  15 gggttggaggagaaggttgagggtgtgggaggag 48  Q
    |||||||||||||||||||||| |||||||||||    
T  26510215 gggttggaggagaaggttgaggatgtgggaggag 26510248  T

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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 34829716 - 34829637
Alignment:
Q  15 gggttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    |||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |||| |||||||||||||||||||    
T  34829716 gggttggaggagaaggttgaggctgtgggaggaggagatgctagaggagtgtaggaaattacttaatggtgttgttttgc 34829637  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 292
Target Start/End: Complemental strand, 34829394 - 34829284
Alignment:
Q  182 tgtgttgcaggttggggcatggaagagtctgcgacacacttatttcttcattgcgccactttcgacacattgtggcatcatatcaggtgttggatcggaa 281  Q
    |||||| |||| || |||| ||||||||||||| | ||||| ||| ||||||| |||||||||   |||||||||||||||||||||| |||||||||||    
T  34829394 tgtgttacagggtgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcaggtcttggatcggaa 34829295  T
Q  282 taccaggtgtt 292  Q
    |  ||||||||    
T  34829294 tgtcaggtgtt 34829284  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 31675207 - 31675148
Alignment:
Q  35 gggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    ||||||||||||||||  || |||||||||||||| |||| ||||||||||| |||||||    
T  31675207 gggtgtgggaggaggagttggtagaggagtgtaggaaattacttaatggtgtggttttgc 31675148  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 31921213 - 31921272
Alignment:
Q  35 gggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    ||||||||||||||||  || |||||||||||||| |||| ||||||||||| |||||||    
T  31921213 gggtgtgggaggaggagttggtagaggagtgtaggaaattacttaatggtgtggttttgc 31921272  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 34829490 - 34829435
Alignment:
Q  100 aaggtttctatctttgcttggcggttgttgcgagacaggttttcgactaagaataa 155  Q
    ||||| || ||||||||||||||||||||||| |||||||| |||| |||||||||    
T  34829490 aaggtctccatctttgcttggcggttgttgcgggacaggttgtcgattaagaataa 34829435  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 40513562 - 40513628
Alignment:
Q  28 aggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    ||||| ||||||||||||||||||||| ||||||||||||||   ||  |||||||||| |||||||    
T  40513562 aggttaagggtgtgggaggaggatatgctagaggagtgtaggctgttaattaatggtgtcgttttgc 40513628  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 22734550 - 22734616
Alignment:
Q  4 ggagtagcatagggttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggt 70  Q
    |||| ||| |||| ||||||||| ||||||  |||||||||| |||| ||||||| |||||||||||    
T  22734550 ggagaagcttaggtttggaggaggaggttgttggtgtgggagaaggagatgttagcggagtgtaggt 22734616  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 10868017 - 10867965
Alignment:
Q  17 gttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtagg 69  Q
    |||||||| | |||||| |||||||||||||| || | |||||||||||||||    
T  10868017 gttggaggcggaggttgtgggtgtgggaggagaatgtcttagaggagtgtagg 10867965  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 27300102 - 27300028
Alignment:
Q  220 cttatttcttcattgcgccactttcgacacattgtggcatcatatcaggtgttggatcggaataccaggtgttga 294  Q
    ||||||||||| ||||||||||||||  |||||||||||| ||||||| ||||||||||||||||||||||||||    
T  27300102 cttatttcttcgttgcgccactttcggtacattgtggcattatatcagatgttggatcggaataccaggtgttga 27300028  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 43516586 - 43516652
Alignment:
Q  28 aggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    ||||||||||||||||||||||||||| |||||||||||||| | ||  |||||||||| |||||||    
T  43516586 aggttgagggtgtgggaggaggatatgctagaggagtgtaggcatttaattaatggtgtcgttttgc 43516652  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 20544381 - 20544305
Alignment:
Q  15 gggttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttt 91  Q
    |||||||||| || || |||||| |||||||||||| |||||||||||||||||||  ||  |||||||||| ||||    
T  20544381 gggttggaggcgacggctgagggcgtgggaggaggagatgttagaggagtgtaggtttttaattaatggtgtcgttt 20544305  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 43273703 - 43273656
Alignment:
Q  19 tggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgt 66  Q
    ||||||||| ||||| |||| ||||||||||||||||||| |||||||    
T  43273703 tggaggagacggttgtgggtttgggaggaggatatgttaggggagtgt 43273656  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 20544021 - 20543960
Alignment:
Q  221 ttatttcttcattgcgccactttcgacacattgtggcatcatatcaggtgttggatcggaat 282  Q
    |||||| |||| ||||||||||| |   |||||||||||| |||||||| ||||||||||||    
T  20544021 ttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaat 20543960  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 52617709 - 52617761
Alignment:
Q  17 gttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtagg 69  Q
    |||||| |||||| ||| ||||||||||||| || ||| ||||||||||||||    
T  52617709 gttggaagagaagcttgtgggtgtgggaggaagagatggtagaggagtgtagg 52617761  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 7300970 - 7300893
Alignment:
Q  17 gttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    ||||||||||||| ||| |||||||||||||||| ||| ||||||||||||| ||| | |||||||||||||||||||    
T  7300970 gttggaggagaagattgtgggtgtgggaggaggagatggtagaggagtgtagataacttcttaatggtgttgttttgc 7300893  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 11196648 - 11196569
Alignment:
Q  15 gggttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    |||||||||| ||| ||||||||||||||||||||| ||| |||||||||||||| ||||  |||||||||| |||||||    
T  11196648 gggttggaggcgaatgttgagggtgtgggaggaggagatgctagaggagtgtaggcaattaattaatggtgtcgttttgc 11196569  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 69
Target Start/End: Complemental strand, 15017953 - 15017919
Alignment:
Q  35 gggtgtgggaggaggatatgttagaggagtgtagg 69  Q
    |||||||||||||||| ||||||||||||||||||    
T  15017953 gggtgtgggaggaggagatgttagaggagtgtagg 15017919  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 32624290 - 32624229
Alignment:
Q  221 ttatttcttcattgcgccactttcgacacattgtggcatcatatcaggtgttggatcggaat 282  Q
    |||||| |||||||||||||||| |   |||||||||||| |||||||| |||||| |||||    
T  32624290 ttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggattggaat 32624229  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 11196430 - 11196370
Alignment:
Q  92 tgccgctaaaggtttctatctttgcttggcggttgttgcgagacaggttttcgactaagaa 152  Q
    ||||||| |||||||| || ||| ||||||| ||||||||||| |||||  ||||||||||    
T  11196430 tgccgctgaaggtttccatttttacttggcgattgttgcgagataggttgccgactaagaa 11196370  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 476490 - 476431
Alignment:
Q  35 gggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    ||||||||||||||||  || |||||||||||||| |||| |||||||||||||||||||    
T  476490 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgttttgc 476431  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 42039550 - 42039607
Alignment:
Q  17 gttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggtaatt 74  Q
    ||||||||||||||||| |||||||||| || || |||||||||||||||||| ||||    
T  42039550 gttggaggagaaggttgtgggtgtgggaagaagaaatgttagaggagtgtaggcaatt 42039607  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 23923142 - 23923091
Alignment:
Q  19 tggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggt 70  Q
    |||||||| |||||| |||||||||||||||| ||||||| |||||||||||    
T  23923142 tggaggaggaggttgtgggtgtgggaggaggagatgttagcggagtgtaggt 23923091  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 69
Target Start/End: Complemental strand, 587790 - 587759
Alignment:
Q  38 tgtgggaggaggatatgttagaggagtgtagg 69  Q
    ||||||||||||||||||||||||||||||||    
T  587790 tgtgggaggaggatatgttagaggagtgtagg 587759  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 21368129 - 21368183
Alignment:
Q  228 ttcattgcgccactttcgacacattgtggcatcatatcaggtgttggatcggaat 282  Q
    |||||||||||||||| |   |||||||||||| |||||||| ||||||||||||    
T  21368129 ttcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaat 21368183  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 15862708 - 15862749
Alignment:
Q  99 aaaggtttctatctttgcttggcggttgttgcgagacaggtt 140  Q
    ||||||||||||||| |||||||||||| | |||||||||||    
T  15862708 aaaggtttctatcttagcttggcggttgcttcgagacaggtt 15862749  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 18891746 - 18891803
Alignment:
Q  13 tagggttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgtaggt 70  Q
    |||| ||||||||| |||||| ||||| |||||||||| | ||||| |||||||||||    
T  18891746 taggtttggaggaggaggttgtgggtgggggaggaggagaagttagtggagtgtaggt 18891803  T

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Target: scaffold0043 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 34472 - 34529
Alignment:
Q  35 gggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgtttt 92  Q
    ||||||||||||||||  || |||||||||||||| |||| |||||||||||||||||    
T  34472 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgtttt 34529  T

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Target: scaffold0555 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 7945 - 7886
Alignment:
Q  35 gggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    ||||||||||||||||  || |||||||||||||| |||| ||||||| |||||||||||    
T  7945 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatgttgttgttttgc 7886  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 94
Target Start/End: Original strand, 14844000 - 14844059
Alignment:
Q  35 gggtgtgggaggaggatatgttagaggagtgtaggtaattgcttaatggtgttgttttgc 94  Q
    ||||||||||||||||  || |||| ||||||||| |||| |||||||||||||||||||    
T  14844000 gggtgtgggaggaggagttggtagaagagtgtaggcaattacttaatggtgttgttttgc 14844059  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 70
Target Start/End: Complemental strand, 18588636 - 18588594
Alignment:
Q  28 aggttgagggtgtgggaggaggatatgttagaggagtgtaggt 70  Q
    |||||| ||||||||||||||||| | ||||||||||||||||    
T  18588636 aggttgtgggtgtgggaggaggatcttttagaggagtgtaggt 18588594  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 47923988 - 47923940
Alignment:
Q  19 tggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgta 67  Q
    |||||||| |||||| ||||||||||||| || ||||||||||||||||    
T  47923988 tggaggaggaggttgtgggtgtgggaggaagagatgttagaggagtgta 47923940  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 30573187 - 30573237
Alignment:
Q  17 gttggaggagaaggttgagggtgtgggaggaggatatgttagaggagtgta 67  Q
    |||||||||| |||||| |||||||||||||||| ||| ||| ||||||||    
T  30573187 gttggaggaggaggttgtgggtgtgggaggaggagatgctaggggagtgta 30573237  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 15124677 - 15124717
Alignment:
Q  18 ttggaggagaaggttgagggtgtgggaggaggatatgttag 58  Q
    ||||| ||| |||||| ||||||||||||||||||||||||    
T  15124677 ttggatgaggaggttgtgggtgtgggaggaggatatgttag 15124717  T

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Target: scaffold0112 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 69
Target Start/End: Original strand, 15517 - 15547
Alignment:
Q  39 gtgggaggaggatatgttagaggagtgtagg 69  Q
    |||||||||||||||||||||||||||||||    
T  15517 gtgggaggaggatatgttagaggagtgtagg 15547  T

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