View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11786_high_3 (Length: 568)
Name: NF11786_high_3
Description: NF11786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11786_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Original strand, 22234071 - 22234521
Alignment:
| Q |
19 |
tgcttcctatgcaattgtctctgtcttctgctccctcttctatgtacctacaaatggagataatggaatcatactttgaatttcttgttattatttgata |
118 |
Q |
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| T |
22234071 |
tgcttcctatgcaattgtctctgtcttctgctccctcttctatgtacctacaaatggagataatggaatcatactttgaatttcttgttattatttgata |
22234170 |
T |
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| Q |
119 |
aacaaataaatatatactcttctcttttaccttcctttttcttatctttaagccttgtttgcaatatgaaannnnnnncatcattaaaatgacttcattt |
218 |
Q |
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| T |
22234171 |
aacaaataaatatatactcttctcttttaccttcctttttcttatctttaagtcttgtttgcaatatgaaatttttttcatcattaaaatgacttcattt |
22234270 |
T |
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| Q |
219 |
ttcatggtactataccttagccttaactttttgaatttcactttttagaatccacttggtcacacccttttttctatctttaaataaagtttgatcannn |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22234271 |
ttcatggtactataccttagccttaactttttgaatttcactttttagaatccacttggtcacacccttttttctatctttaaataaagtttgatcattt |
22234370 |
T |
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| Q |
319 |
nnnncaattgtggtgttcttaattccatttgagactctcttcaagaaacaaagacagtgttcatggaaattgatctaaacaatgaagtgattgagattga |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22234371 |
ttttcaattgtggtgttcttaattccatttgagactctcttcaagaaacaaagacagtgttcatggaaattgatctaaacaatgaagtgattgaggttga |
22234470 |
T |
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| Q |
419 |
gaagaatgcattgtgccataaggaatgtgtaaaaggtttttgtttctgtgt |
469 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22234471 |
gaagaatgcattgtgccataaggaatgtgaaaaaggtttttgtttctgtgt |
22234521 |
T |
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