View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11786_high_4 (Length: 511)
Name: NF11786_high_4
Description: NF11786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11786_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 21435037 - 21435543
Alignment:
| Q |
1 |
tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21435037 |
tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat |
21435136 |
T |
|
| Q |
101 |
gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaactacattgtcagg |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21435137 |
gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaactacattgtcagg |
21435236 |
T |
|
| Q |
201 |
aaaacacaatagttacttgtaattagttaaagaggattgttgcaagtaaaatcgctttgtctcgagtgtcattataataggtggctgagacgtattctga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21435237 |
aaaacacaatagttacttgtaattagttaaagaggattgttgcaagtaaaatcgctttgtctcgagtgtcattataataggtggctgagacgtattctga |
21435336 |
T |
|
| Q |
301 |
atgttttaatattggagttcttttgcaacggtggtggtgataatccataacaaccctgtttgtattttttgcacagtgtatatgtattttttgttgttct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21435337 |
atgttttaatattggagttcttttgcaacagtggtggtgataatccataacaaccctgtttgtattttttgcacagtgtataggtattttttgttgttct |
21435436 |
T |
|
| Q |
401 |
ctaaagtttaggattatactagtatacgattaaaacaattactttttagattgttttttggtccactgttattatcgatacaaatgaagagtttaatgag |
500 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21435437 |
ctaaagtttaggattatactagtatacgattaaattgattactttttagattgttttttggtccactgttattatcgatacacatgaagagtttaatgag |
21435536 |
T |
|
| Q |
501 |
tgaaaga |
507 |
Q |
| |
|
||||||| |
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|
| T |
21435537 |
tgaaaga |
21435543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 27074076 - 27073888
Alignment:
| Q |
1 |
tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||| |||||||| ||| || |||||| | |||||| |
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| T |
27074076 |
tcaggaggatagcagagcggttaggagctacttgtttgaaaaaacatgaccccactgtgacacatgtagttgctactgattttgtaactaaagagtcccg |
27073977 |
T |
|
| Q |
101 |
gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaact |
189 |
Q |
| |
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||||| | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
27073976 |
ctgggccgtgaaagaaaagaagtttttggttaatcgtcgatggctagaggctgcaaatttctttttgcaaaagcagcctgaggagaact |
27073888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 27153783 - 27153960
Alignment:
| Q |
1 |
tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| ||||||||| | |||||||||||||||| ||||||||||| ||| |||||| ||||||| || |
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|
| T |
27153783 |
tcaggaagatagcagagcggttaggagctactcatttaacagaacttaggcccactgtgacacatgtagttgctaatgcgtttgtaactaaggagtctat |
27153882 |
T |
|
| Q |
101 |
gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcc |
178 |
Q |
| |
|
||| |||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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|
| T |
27153883 |
gtgagcagtgaacgaaaatatgtttttggttaatcgtcgatggatagaggcttcaaatttctttttgcaaaagtagcc |
27153960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 26990856 - 26991086
Alignment:
| Q |
1 |
tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| | ||| || || || |||||| |||||||| |
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|
| T |
26990856 |
tcaggaggatagcagagcggttaggagctacttgtttgaaaaaacttgaccccactgtgacacatgtaattggtacagattttgtaactaaggagtcccg |
26990955 |
T |
|
| Q |
101 |
gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaactacattgtcagg |
200 |
Q |
| |
|
|||||| | | |||| || ||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
26990956 |
gtgggccgtgcaagagaagaagtttttggttagtcgtcgttggctagaggctgcaaatttctttttgcaaaagcagcctgaggagaactttcttgtc--- |
26991052 |
T |
|
| Q |
201 |
aaaacacaatagttacttgtaattagttaaagag |
234 |
Q |
| |
|
|||| ||| ||||| || |||||||||||||||| |
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|
| T |
26991053 |
aaaatacactagtttctggtaattagttaaagag |
26991086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 27029742 - 27029930
Alignment:
| Q |
1 |
tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| | ||| || ||||||||||||||||| |||||||| ||| || |||||| | |||||| |
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|
| T |
27029742 |
tcaggaggatagcagagaggttaggagctacttgtttgaaaaaacatgaccccactgtgacacatgtagttgctactgattttgtaactaaagagtcccg |
27029841 |
T |
|
| Q |
101 |
gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaact |
189 |
Q |
| |
|
||||| | ||||||| ||||||||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||||| |||| |
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|
| T |
27029842 |
ctgggccgttgaagaaaagaagtttttggttaatcgtcgatggctagaggctgcagatttctatttccaaaagcagcctgaggaaaact |
27029930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 370
Target Start/End: Original strand, 27153974 - 27154056
Alignment:
| Q |
288 |
agacgtattctgaatgttttaatattggagttcttttgcaacggtggtggtgataatccataacaaccctgtttgtatttttt |
370 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||| || | |||||||||||||||||| ||||| ||||| |||| |
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|
| T |
27153974 |
agacgtattctgaatgtttgaatattggtgttcttttgcaacagttgcggtgataatccataacaaacctgtgtgtatatttt |
27154056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 371
Target Start/End: Original strand, 27031141 - 27031204
Alignment:
| Q |
308 |
aatattggagttcttttgcaacggtggtggtgataatccataacaaccctgtttgtattttttg |
371 |
Q |
| |
|
||||||||||||||| | || | | ||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
27031141 |
aatattggagttcttgtacatcagaggtggtgataatccataacaatcctgtttgtattttttg |
27031204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 496
Target Start/End: Original strand, 27154097 - 27154211
Alignment:
| Q |
384 |
gtattttttgttgttctctaaagttt-----aggattatactagtatacgattaaaacaattactttttagattgttttttggtccactgttattatcga |
478 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| | | | |||||||||| ||||||| |||| ||||||||| | |
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|
| T |
27154097 |
gtattttttgttgttctctaaagtttaggtcaggattatactagtatacgattaa---attgagtttttagattcttttttgatccaaagttattatcaa |
27154193 |
T |
|
| Q |
479 |
tacaaatgaagagtttaa |
496 |
Q |
| |
|
|| |||||| ||| |||| |
|
|
| T |
27154194 |
tagaaatgatgaggttaa |
27154211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 34693113 - 34693343
Alignment:
| Q |
1 |
tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| | ||| || || || |||||| |||||||| |
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|
| T |
34693113 |
tcaggaggatagcagagcggttaggagctacttgtttgaaaaaacttgaccccactgtgacacatgtaattggtacagattttgtaactaaggagtcccg |
34693212 |
T |
|
| Q |
101 |
gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaactacattgtcagg |
200 |
Q |
| |
|
|||||| | | |||| || ||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
34693213 |
gtgggccgtgcaagagaagaagtttttggttagtcgtcgttggctagaggctgcaaatttctttttgcaaaagcagcctgaggagaactttcttgtc--- |
34693309 |
T |
|
| Q |
201 |
aaaacacaatagttacttgtaattagttaaagag |
234 |
Q |
| |
|
|||| ||| ||||| || |||||||||||||||| |
|
|
| T |
34693310 |
aaaatacactagtttctggtaattagttaaagag |
34693343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 50171779 - 50171614
Alignment:
| Q |
24 |
ggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatga-gttggtaactgaggagtccatgtgggcagagaaagaaaataag |
122 |
Q |
| |
|
|||||||| ||||||| ||||||| ||||||||||||||||| ||||||| ||| | ||| ||||||| |||| |||||||| |||||||| ||| |
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| T |
50171779 |
ggagctacctgtttgatggaacttgaccccactgtgacacatgtggttgctactgatgctgg-aactgagaagtctcggtgggcagttaaagaaaagaag |
50171681 |
T |
|
| Q |
123 |
tttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaact |
189 |
Q |
| |
|
||||||||| ||| |||||| |||||||| |||| | ||||| ||||||||| || |||||||||| |
|
|
| T |
50171680 |
tttttggttcatccccgatggatagaggctgcaaactacttttggcaaaagcaaccagaggagaact |
50171614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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