View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11786_low_1 (Length: 683)

Name: NF11786_low_1
Description: NF11786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11786_low_1
NF11786_low_1
[»] chr3 (18 HSPs)
chr3 (14-198)||(6269427-6269613)
chr3 (13-198)||(22968444-22968631)
chr3 (13-198)||(19390126-19390313)
chr3 (13-203)||(39771765-39771957)
chr3 (13-195)||(40081741-40081922)
chr3 (25-194)||(34084134-34084305)
chr3 (13-200)||(11018212-11018401)
chr3 (13-170)||(45182989-45183148)
chr3 (13-169)||(27935187-27935345)
chr3 (29-178)||(45335875-45336025)
chr3 (24-166)||(6930905-6931049)
chr3 (13-170)||(33040961-33041120)
chr3 (25-198)||(6503581-6503756)
chr3 (29-170)||(19565517-19565660)
chr3 (13-60)||(22922215-22922262)
chr3 (13-88)||(35514354-35514429)
chr3 (98-154)||(5135293-5135349)
chr3 (122-194)||(22922141-22922213)
[»] chr5 (21 HSPs)
chr5 (13-199)||(36293621-36293809)
chr5 (13-203)||(26283318-26283510)
chr5 (13-198)||(39434676-39434863)
chr5 (24-195)||(10033910-10034083)
chr5 (24-195)||(13817960-13818133)
chr5 (24-199)||(39657517-39657694)
chr5 (13-159)||(16155016-16155164)
chr5 (13-170)||(12278860-12279019)
chr5 (14-194)||(1776377-1776559)
chr5 (24-148)||(16333887-16334013)
chr5 (13-191)||(19985926-19986106)
chr5 (29-198)||(3155647-3155818)
chr5 (13-170)||(17332551-17332710)
chr5 (13-164)||(33430335-33430488)
chr5 (13-170)||(31680375-31680534)
chr5 (13-168)||(37254651-37254808)
chr5 (25-159)||(31501728-31501864)
chr5 (13-161)||(43068894-43069044)
chr5 (13-176)||(36291373-36291538)
chr5 (98-154)||(28801311-28801367)
chr5 (142-195)||(14316641-14316694)
[»] chr7 (18 HSPs)
chr7 (15-198)||(14777109-14777294)
chr7 (24-198)||(5555467-5555643)
chr7 (24-199)||(3114107-3114284)
chr7 (24-194)||(8394109-8394281)
chr7 (13-194)||(36630800-36630983)
chr7 (13-170)||(34389056-34389215)
chr7 (13-170)||(37002144-37002303)
chr7 (13-169)||(35090177-35090335)
chr7 (13-162)||(40920003-40920154)
chr7 (15-170)||(8867733-8867890)
chr7 (13-88)||(26624838-26624913)
chr7 (13-88)||(36658273-36658348)
chr7 (14-88)||(38638237-38638311)
chr7 (13-88)||(43184468-43184543)
chr7 (24-154)||(33685588-33685720)
chr7 (13-88)||(7002817-7002892)
chr7 (13-88)||(7048688-7048763)
chr7 (105-159)||(36658200-36658254)
[»] chr2 (19 HSPs)
chr2 (13-198)||(41251634-41251821)
chr2 (13-198)||(17445041-17445226)
chr2 (13-201)||(6403804-6403994)
chr2 (24-198)||(35962695-35962871)
chr2 (24-198)||(42439966-42440142)
chr2 (24-201)||(32127152-32127331)
chr2 (24-198)||(18981597-18981772)
chr2 (13-194)||(31581622-31581805)
chr2 (43-198)||(2958131-2958287)
chr2 (24-199)||(16405579-16405756)
chr2 (14-170)||(8147359-8147518)
chr2 (13-170)||(45418591-45418750)
chr2 (14-170)||(771007-771165)
chr2 (13-170)||(44084603-44084762)
chr2 (24-88)||(2285954-2286018)
chr2 (13-153)||(12756837-12756979)
chr2 (103-169)||(7072644-7072710)
chr2 (98-171)||(4555298-4555370)
chr2 (24-150)||(8059344-8059472)
[»] scaffold0069 (1 HSPs)
scaffold0069 (13-200)||(17820-18009)
[»] chr4 (41 HSPs)
chr4 (13-198)||(20129290-20129477)
chr4 (13-202)||(13012164-13012355)
chr4 (13-198)||(47500753-47500940)
chr4 (13-198)||(26439279-26439466)
chr4 (13-198)||(34407284-34407471)
chr4 (13-198)||(25930688-25930875)
chr4 (199-488)||(36234537-36234817)
chr4 (13-198)||(43355884-43356071)
chr4 (13-194)||(36382346-36382528)
chr4 (24-198)||(29319716-29319892)
chr4 (24-195)||(40528996-40529171)
chr4 (13-170)||(30216742-30216901)
chr4 (25-195)||(17511245-17511417)
chr4 (25-201)||(43143596-43143774)
chr4 (25-170)||(42333788-42333935)
chr4 (24-170)||(3292907-3293055)
chr4 (13-166)||(29995983-29996138)
chr4 (13-176)||(48989330-48989495)
chr4 (13-88)||(6235612-6235687)
chr4 (15-170)||(50205079-50205236)
chr4 (24-170)||(6690246-6690394)
chr4 (31-168)||(10352902-10353041)
chr4 (13-148)||(44156681-44156818)
chr4 (26-178)||(26448053-26448206)
chr4 (29-177)||(30077647-30077797)
chr4 (199-271)||(36216809-36216881)
chr4 (98-166)||(48129978-48130046)
chr4 (98-201)||(27363338-27363441)
chr4 (25-88)||(13392893-13392956)
chr4 (25-88)||(13396032-13396095)
chr4 (25-88)||(28877262-28877325)
chr4 (25-88)||(35546045-35546108)
chr4 (486-559)||(36234428-36234505)
chr4 (98-159)||(45194195-45194256)
chr4 (98-166)||(30109968-30110036)
chr4 (13-88)||(1817809-1817884)
chr4 (633-669)||(36234358-36234394)
chr4 (104-151)||(28877343-28877390)
chr4 (527-557)||(35901025-35901055)
chr4 (313-347)||(36216742-36216776)
chr4 (382-443)||(36216646-36216707)
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-198)||(480457-480644)
[»] chr6 (12 HSPs)
chr6 (13-198)||(398597-398784)
chr6 (24-198)||(34948769-34948945)
chr6 (24-198)||(13837801-13837977)
chr6 (305-559)||(25467229-25467477)
chr6 (13-170)||(18339114-18339273)
chr6 (13-170)||(28996738-28996897)
chr6 (29-170)||(29743291-29743434)
chr6 (98-159)||(31028451-31028512)
chr6 (13-159)||(33229336-33229484)
chr6 (199-270)||(25467132-25467203)
chr6 (228-265)||(29135112-29135149)
chr6 (98-159)||(24697904-24697965)
[»] chr1 (12 HSPs)
chr1 (13-198)||(26144235-26144422)
chr1 (24-198)||(7433425-7433601)
chr1 (13-191)||(32982056-32982236)
chr1 (13-195)||(42310941-42311125)
chr1 (13-153)||(3829009-3829150)
chr1 (24-198)||(35907532-35907708)
chr1 (13-178)||(321377-321544)
chr1 (98-198)||(23313218-23313319)
chr1 (199-271)||(9770454-9770526)
chr1 (14-88)||(17445405-17445479)
chr1 (305-348)||(9770386-9770429)
chr1 (98-195)||(41972362-41972458)
[»] scaffold2142 (1 HSPs)
scaffold2142 (13-201)||(499-689)
[»] chr8 (13 HSPs)
chr8 (13-198)||(39914495-39914681)
chr8 (13-195)||(29728386-29728570)
chr8 (13-202)||(3648794-3648985)
chr8 (24-194)||(15838270-15838441)
chr8 (13-170)||(16788025-16788184)
chr8 (25-199)||(34136837-34137013)
chr8 (25-168)||(4404018-4404163)
chr8 (13-170)||(23402116-23402275)
chr8 (98-178)||(36408551-36408631)
chr8 (13-88)||(9877312-9877387)
chr8 (103-154)||(40470585-40470636)
chr8 (13-88)||(42231029-42231104)
chr8 (98-151)||(3435296-3435349)
[»] scaffold0041 (1 HSPs)
scaffold0041 (13-162)||(52941-53092)
[»] scaffold0502 (1 HSPs)
scaffold0502 (13-170)||(5238-5397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (13-166)||(31492-31647)


Alignment Details
Target: chr3 (Bit Score: 121; Significance: 1e-61; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 6269427 - 6269613
Alignment:
Q  14 agatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaat 111  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||           ||||||||||||||    
T  6269427 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaat 6269526  T
Q  112 gagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||| ||||||||||||||||||||    
T  6269527 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgctacacggtagaaccgcccatg 6269613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 22968444 - 22968631
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||           |||||||||||||    
T  22968444 gagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacgtgtgacaatttttagattgcccaaatttttctttttgtaaatgtgttaa 22968543  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    || ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||||||||||||||||||    
T  22968544 tgggcttttgggttaagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgctacacggtagaaccgcccatg 22968631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 19390313 - 19390126
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||           |||||||||||||    
T  19390313 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 19390214  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    |   |||||  ||||||||||||||||||||||||||||||||  |||||||||||||||  ||||||||||||||||||| ||||||    
T  19390213 tagacttttaggttgagtctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgccacacggtagaacctcccatg 19390126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 39771957 - 39771765
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnngta--aatgtgttaa 110  Q
    |||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||||||          ||  ||||||||||    
T  39771957 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 39771858  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatggttgg 203  Q
    || ||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||  ||||| ||||||| |||||||||||| ||||    
T  39771857 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatgattgg 39771765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 40081741 - 40081922
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| | ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||| ||||||||||           |||||||||||||    
T  40081741 gagatgaacccgtcaatagtgtgctaaaaaaaat-ccaagatctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaa 40081839  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgccc 195  Q
    |||||||||| |||||||||||||| |||||||||||||||||| |||| ||||| || | |||||||| |||||||||||||||    
T  40081840 tgagcttttg-gttgagtctaatgttcaaaaattatcgatcgagcccgggcgacctccag-agtcgccatacggtagaaccgccc 40081922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 25 - 194
Target Start/End: Original strand, 34084134 - 34084305
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttgag 122  Q
    ||||||||||||||||||||||||||||| |||||| ||||||| |||||||| ||||||||||           |||||||||||||||  |||||  |    
T  34084134 tcaatagtgtgctaaataaaattccaagacctatttgcgtgtgataattttcatattgcccaaatttttctttttgtaaatgtgttaatggactttttgg 34084233  T
Q  123 ttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcc 194  Q
    |||| | |||||||||||||||||||||||||||||| ||||||||||  ||||||| ||||||||||||||    
T  34084234 ttgaatttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgccatacggtagaaccgcc 34084305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 11018212 - 11018401
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| | |||||| ||||||||||||||||||  ||| |||||| ||||||| |||||||||||||||||||           |||| ||||||||    
T  11018212 gagatgaacccgtcaattgtgtgctaaataaaattctgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 11018311  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatggt 200  Q
    |  ||||||| ||||||||||||||||||||||||||||||||| | || |||||||||| |||||||  |||||  |||||||||||||    
T  11018312 ttggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgcccatggt 11018401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 45183148 - 45182989
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| ||||||  |||||| |||||||||||||||||||           |||| ||||||||    
T  45183148 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgtgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 45183049  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |  ||||||| |||| |||||||| ||||||||||||||||||| |||| ||||||||||    
T  45183048 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccg 45182989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 27935345 - 27935187
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| | ||||||||| |||||||||||||||| ||| |||||| ||| ||| |||||||||||||||||||           |||| ||||||||    
T  27935345 gagatgaacccgtcaatagtatgctaaataaaattccgagacctattttcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 27935246  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgccc 169  Q
    |||||||||| |||| || ||||||||||||||||||||||||| |||| |||| ||||    
T  27935245 tgagcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgccc 27935187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 29 - 178
Target Start/End: Complemental strand, 45336025 - 45335875
Alignment:
Q  29 tagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttgagttga 126  Q
    ||||||||||||||||||||||||| |||||| ||||| | ||||||||||||||||| |           ||||||||||||||||  ||||| ||||     
T  45336025 tagtgtgctaaataaaattccaagacctatttgcgtgtaagaattttcagattgcccagatttttctttttgtaaatgtgttaatgactttttg-gttgg 45335927  T
Q  127 gtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgcc 178  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||| ||||||    
T  45335926 gtctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgcc 45335875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 24 - 166
Target Start/End: Original strand, 6930905 - 6931049
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||| |||           ||||||||||||||  |||||||     
T  6930905 gtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcctaaatttttctttttgtaaatgtgttaattggcttttgg 6931004  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccg 166  Q
    ||||  ||||||| ||||||||||||||||||| |||| ||||||    
T  6931005 gttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccg 6931049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 33041120 - 33040961
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| ||||||| |||||||| ||||  ||||           |||| ||||||||    
T  33041120 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcaaattgttcaaatttttctttttgtaagtgtgttaa 33041021  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    | |||||||| |||| ||||||| ||||||||||||| |||||| |||  ||||||||||    
T  33041020 ttagcttttgggttgggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccg 33040961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 198
Target Start/End: Original strand, 6503581 - 6503756
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttgag 122  Q
    ||||| ||||||||||||||| ||| ||| |||||| | ||||| ||||||||||||||  |||           |||| |||| ||||  ||||||| |    
T  6503581 tcaattgtgtgctaaataaaaatccgagacctatttgcctgtgagaattttcagattgcttaaatttttctttttgtaagtgtgctaattggcttttggg 6503680  T
Q  123 ttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    ||||||||||| ||||||||| |||||||||| |||| ||||||||||  ||||||  |||||  |||||||||||    
T  6503681 ttgagtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgcccatg 6503756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 170
Target Start/End: Original strand, 19565517 - 19565660
Alignment:
Q  29 tagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaatgagcttttgagttga 126  Q
    ||||||||||||||||||||| ||| |||||| ||||| | ||||||||||||| |||||           |||||||||||||||   ||||  ||||     
T  19565517 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgtaaatgtgttaatggattttttggttgg 19565616  T
Q  127 gtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |||||||||||||||||||||||| ||  |||| ||||||||||    
T  19565617 gtctaatgtgcaaaaattatcgattgaacccgggcgaccgcccg 19565660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Complemental strand, 22922262 - 22922215
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctattt 60  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||||    
T  22922262 gagatgaacccgtcaatagtgtgttaaataaaattccaagatctattt 22922215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 35514429 - 35514354
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    |||||||| | ||||||||||||| |||||||||||| ||| |||||| || |||| |||||||| |||| |||||    
T  35514429 gagatgaacccgtcaatagtgtgcaaaataaaattcctagacctatttgcgagtgagaattttcatattgtccaaa 35514354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 5135349 - 5135293
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgag 154  Q
    |||| |||||||||||||||||  |||| ||||||||| ||||||| ||||||||||    
T  5135349 gtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcgatcgag 5135293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 122 - 194
Target Start/End: Complemental strand, 22922213 - 22922141
Alignment:
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcc 194  Q
    ||||||| |||||||||||||| |||||||||| |||  ||||||||||   |||||| ||||| ||||||||    
T  22922213 gttgagtttaatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgccatacggtggaaccgcc 22922141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 36293621 - 36293809
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||           |||||||||||||    
T  36293621 gagatgaaactgtaaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 36293720  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatgg 199  Q
    || ||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  36293721 tgggcttttgggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgccacacggtagaaccgcccatgg 36293809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 26283318 - 26283510
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnngta--aatgtgttaa 110  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||          ||  ||||||||||    
T  26283318 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 26283417  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatggttgg 203  Q
    ||| |||||  ||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||| |||||||||||| ||||    
T  26283418 tgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgctacacggtggaaccgcccatgtttgg 26283510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 39434863 - 39434676
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||           |||||||||||||    
T  39434863 gagatgaaactgtcaatagtgtgctaaataaaattcaaagacctatttacatgtgacaattttcagattgcccaaatttttcattttgtaaatgtgttaa 39434764  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    || ||||||| ||||||||||||||| ||||||||||||||||| |||| |||||||||   ||||||||||||||||||||||||||    
T  39434763 tgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgccacacggtagaaccgcccatg 39434676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 10034083 - 10033910
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||           ||||||||||||||| |||||||     
T  10034083 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 10033984  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgccc 195  Q
    ||||||||||||||||||||||||||||||||| |||| ||| || |||  ||||||| |||||||||||||||    
T  10033983 gttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgccatacggtagaaccgccc 10033910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 13818133 - 13817960
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    ||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||           ||||||||||||||| |||||||     
T  13818133 gtcaatagtgtgctaaataaatttccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 13818034  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgccc 195  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||||  ||||||| |||||||||||||||    
T  13818033 gttgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgccatacggtagaaccgccc 13817960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 39657517 - 39657694
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||           |||||||||||||||||||||||     
T  39657517 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgagcttttgg 39657616  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatgg 199  Q
    |||||||||||||||||||||||||| |||||| ||| ||||||| | |  ||||||| |  ||||||||||||||||    
T  39657617 gttgagtctaatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgccatatagtagaaccgcccatgg 39657694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 16155164 - 16155016
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||            ||||||||||||    
T  16155164 gagatgaatctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcctaaatttttctttttataaatgtgttaa 16155065  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccgg 159  Q
    || ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  16155064 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 16155016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 12278860 - 12279019
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| |||||||||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||           |||| ||||||||    
T  12278860 gagatgaacctgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 12278959  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |  || |||| |||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  12278960 ttggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccg 12279019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 1776377 - 1776559
Alignment:
Q  14 agatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaat 111  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||           ||||||||||||||    
T  1776377 agatgaacctgtcgatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaat 1776476  T
Q  112 gagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcc 194  Q
    |  |||||  ||||| | |||||| |||||||||||||||||| |||| ||||||||||  |||| || ||||||||||||||    
T  1776477 ggactttttggttgactttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcatacggtagaaccgcc 1776559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 148
Target Start/End: Original strand, 16333887 - 16334013
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||           ||||||||||||||| |||||||     
T  16333887 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 16333986  T
Q  122 gttgagtctaatgtgcaaaaattatcg 148  Q
    ||||| |||||||||||||||||||||    
T  16333987 gttgaatctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 13 - 191
Target Start/End: Complemental strand, 19986106 - 19985926
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| |||||||||||||| ||||||||||| ||||| |||||| ||||||| |||||| ||||| ||||||           ||||||||| |||    
T  19986106 gagatgaacctgtcaatagtgtgttaaataaaatttcaagacctatttgcgtgtgataatttttagattacccaaatttttctttttgtaaatgtgctaa 19986007  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaacc 191  Q
    ||  |||||| ||||| |||||||||||||||||||||||||||  ||||||||||||||| |||| || |||||| ||||    
T  19986006 tggacttttgggttgaatctaatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcgtcatacggtaaaacc 19985926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 3155647 - 3155818
Alignment:
Q  29 tagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaatgagcttttgagttga 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||            ||||||||||||||  |||||  |||||    
T  3155647 tagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatggacttttaggttga 3155746  T
Q  127 gtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    ||| |||||||||||||||| ||||||| |||  ||||||||||   |||||| ||| ||||||||||||||    
T  3155747 gtcgaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgccatacgatagaaccgcccatg 3155818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 17332551 - 17332710
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||           |||| ||||||||    
T  17332551 gagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaa 17332650  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |  ||||||| |||| ||||||| |||||||||||||||||||| |||| ||| ||||||    
T  17332651 ttggcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgggcgaacgcccg 17332710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 33430488 - 33430335
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||           |||| ||||||||    
T  33430488 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 33430389  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgac 164  Q
    |  ||||||| |||| |||||||| ||||||||||||||||||| |||| ||||    
T  33430388 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 31680534 - 31680375
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| | ||||| |||||||||||||||||||           |||| ||||||||    
T  31680534 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 31680435  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |  ||||||| |||| |||||||| | ||||||||||||||||| |||| ||||||||||    
T  31680434 ttggcttttgggttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccg 31680375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 37254808 - 37254651
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | ||||||| |||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||           |||| ||||||||    
T  37254808 gagatgaacccgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 37254709  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcc 168  Q
    |   |||||| |||| |||||||||||||||||||||||||||| | || ||||||||    
T  37254708 ttgacttttgggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcc 37254651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 31501728 - 31501864
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaatgagcttttgag 122  Q
    ||||||||||||||||||||||| | ||| |||||| |||| || |||||||||||||||||||           |||| |||||||||  ||||||| |    
T  31501728 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgcgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 31501827  T
Q  123 ttgagtctaatgtgcaaaaattatcgatcgagtccgg 159  Q
    ||| |||||||||||||||||||||||||||| ||||    
T  31501828 ttgggtctaatgtgcaaaaattatcgatcgagcccgg 31501864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 43069044 - 43068894
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | | |||||||||||||||||||||||| |||  ||||||| ||| | |||||||||||||||||||           |||||||||||||    
T  43069044 gagatgaatccggcaatagtgtgctaaataaaattccgagacttatttacatgtaagaattttcagattgcccaaatttttctttttgtaaatgtgttaa 43068945  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggac 161  Q
    ||  |||||| |||| |||||||||| ||||||||| ||||||| ||||||    
T  43068944 tggacttttgggttgggtctaatgtgaaaaaattattgatcgagcccggac 43068894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 36291538 - 36291373
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| | |||||||||||| ||||||||||||  ||| ||||||  |||| | |||||| ||||||||||||           |||||||||||||    
T  36291538 gagatgaacccgtcaatagtgtgttaaataaaattctgagacctatttgtgtgtaataattttgagattgcccaaatttttctttttgtaaatgtgttaa 36291439  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcg 176  Q
    ||| |||||  |||   ||||||||||||||||||| ||||||  ||||||||||||||| |||||    
T  36291438 tgaacttttaggttagatctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcg 36291373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 28801367 - 28801311
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgag 154  Q
    |||| |||||||||| |||||||  |||  |||||||||||||||||||||||||||    
T  28801367 gtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcgatcgag 28801311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 14316694 - 14316641
Alignment:
Q  142 attatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgccc 195  Q
    ||||||||||||| | || |||||||||||  |||||| |||||||||||||||    
T  14316694 attatcgatcgagcctgggcgaccgcccgagatcgccatacggtagaaccgccc 14316641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 14777109 - 14777294
Alignment:
Q  15 gatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatg 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||           |||||||||||||||    
T  14777109 gatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatg 14777208  T
Q  113 agcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||   |||| ||||||||||||||||||||    
T  14777209 agcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtagaaccgcccatg 14777294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 5555643 - 5555467
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||           ||||||| ||||||| |||||||     
T  5555643 gtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgcgttaatgggcttttgg 5555544  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||| ||||||||||||||||||    
T  5555543 gttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 5555467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 24 - 199
Target Start/End: Original strand, 3114107 - 3114284
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||           ||||||||||||||| |||||||     
T  3114107 gtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 3114206  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatgg 199  Q
    ||||||||||||||||||||||||||||||||| |||| |||||| |||  ||| ||| |||||||||||||||||||    
T  3114207 gttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcaccatacggtagaaccgcccatgg 3114284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 8394281 - 8394109
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||           |||||||||||||||  |||||      
T  8394281 gtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttg 8394182  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcc 194  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||||||||  ||||||| ||||||||||||||    
T  8394181 gttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcc 8394109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 36630983 - 36630800
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||           |||||||||||||    
T  36630983 gagatgaacccgtcaatagtgtgctaactaaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 36630884  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcc 194  Q
    ||  |||||  ||||||| ||||||||||||||||||||||||| |||| |||||| |||  ||||||| ||||||||||||||    
T  36630883 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccatacggtagaaccgcc 36630800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 34389056 - 34389215
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| | ||| ||| |||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||           |||| ||||||||    
T  34389056 gagatgaacccgtcgataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 34389155  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    | |||||||| |||| |||||||||||||||||||||||||||| |||| ||||||||||    
T  34389156 ttagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccg 34389215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 37002144 - 37002303
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||           |||| ||||||||    
T  37002144 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 37002243  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |   ||||||  ||| |||||||||||||||||||||||||||| ||| |||||||||||    
T  37002244 ttgacttttggattgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccg 37002303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 13 - 169
Target Start/End: Complemental strand, 35090335 - 35090177
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| ||||||| |||||||||||| ||||||           |||| ||||||||    
T  35090335 gagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaatttttctttttgtaagtgtgttaa 35090236  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgccc 169  Q
    |  ||||||| |||| |||||||||||||||||||| ||||||| |||| |||||||||    
T  35090235 ttggcttttgggttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 40920003 - 40920154
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| | ||||| ||||||||||||| |||||           |||||||||||||    
T  40920003 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaa 40920102  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacg 162  Q
    |  ||||||| ||| | ||||||||||||||||||||||||||| |||||||    
T  40920103 ttggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccggacg 40920154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 8867733 - 8867890
Alignment:
Q  15 gatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaatg 112  Q
    |||||| | |||||||||||||||||||||||||| ||| |||||| ||||||| ||||||| |||||||||||           |||||||| |||||     
T  8867733 gatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttccgattgcccaaatttttctttttgtaaatgtattaatt 8867832  T
Q  113 agcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
     |||||||  ||| ||||||| |||||||||||||||||||| |||| ||||||||||    
T  8867833 ggcttttggattgggtctaatatgcaaaaattatcgatcgagcccgggcgaccgcccg 8867890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 26624913 - 26624838
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||    
T  26624913 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa 26624838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 36658348 - 36658273
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||    
T  36658348 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa 36658273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 38638237 - 38638311
Alignment:
Q  14 agatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    ||||||| | |||||||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||    
T  38638237 agatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa 38638311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 43184468 - 43184543
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    |||||||| | |||||||||||||||||||||||||  ||| |||||| ||||||| |||||||||||||||||||    
T  43184468 gagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaa 43184543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 33685720 - 33685588
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    ||||||||||||||||||||||||   |||  ||||| ||| ||| |||||||||||||||||||           |||| |||||||||| |||||||     
T  33685720 gtcaatagtgtgctaaataaaattatgagacatatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggcttttgg 33685621  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgag 154  Q
    |||| || |||||||||||||||||||||||||    
T  33685620 gttgggtttaatgtgcaaaaattatcgatcgag 33685588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 7002892 - 7002817
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    |||||||| | ||||||||||||||||||||||||||  || |||||| ||||||| |||||| |||||| |||||    
T  7002892 gagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaa 7002817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 7048763 - 7048688
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    |||||||| | ||||||||||||||||||||||||||  || |||||| ||||||| |||||| |||||| |||||    
T  7048763 gagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaa 7048688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 36658254 - 36658200
Alignment:
Q  105 tgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccgg 159  Q
    |||||||  ||||||  |||| ||| |||||||||||||||||||||||||||||    
T  36658254 tgttaattggcttttcggttgggtccaatgtgcaaaaattatcgatcgagtccgg 36658200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 41251634 - 41251821
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||           |||||||||||||    
T  41251634 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 41251733  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    || ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||  ||| | ||||||||||||||||||||    
T  41251734 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcactacacggtagaaccgcccatg 41251821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 17445041 - 17445226
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||           |||||||||||||    
T  17445041 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 17445140  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    || ||||||| ||||||||||  |||||||||||||||||||||  ||| ||||||||||| ||||||||||||||||||||||||||    
T  17445141 tgggcttttgggttgagtcta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgccacacggtagaaccgcccatg 17445226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 6403804 - 6403994
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||            ||||||||||||    
T  6403804 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 6403903  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatggtt 201  Q
    ||| |||||  ||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||| ||||||| |||||||||||||||    
T  6403904 tgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatggtt 6403994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 35962871 - 35962695
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||           |||||||||||||| ||||||||     
T  35962871 gtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaataagcttttgg 35962772  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |  ||||||| ||||||||||||||||||    
T  35962771 gttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgccatacggtagaaccgcccatg 35962695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 42440142 - 42439966
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||           ||||||||||||||| |||||||     
T  42440142 gtcaatagtgtgctaaataaaattgcaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 42440043  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    ||| ||||||||||||||||||||||||||||| |||| ||||||||||  ||||||| ||||||||||||||||||    
T  42440042 gtttagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcccatg 42439966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 24 - 201
Target Start/End: Original strand, 32127152 - 32127331
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||           |||||||||||||||||||||||     
T  32127152 gtcaatagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgcctaaatttttctttttgtaaatgtgttaatgagcttttgg 32127251  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatggtt 201  Q
    || |||| ||||||||||||||||| ||||||| |||| ||||||||||  ||||||| ||| |||||||||||||||||    
T  32127252 gtcgagtttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgccatacgctagaaccgcccatggtt 32127331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 18981772 - 18981597
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    ||||| |||||||||||||||||||||||| |||||| |||||||||||||| | ||||||||||           |||||||| ||||||  ||||||     
T  18981772 gtcaacagtgtgctaaataaaattccaagacctatttgcgtgtgacaatttttaaattgcccaaatttttctttttgtaaatgttttaatggacttttgg 18981673  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||  ||||||| ||||||||||||||||||    
T  18981672 gttgagtctaatgtgcaaaaattatcaatcgagcccggacgaccgcccg-ggtcgccatacggtagaaccgcccatg 18981597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 31581622 - 31581805
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||           |||||||||||||    
T  31581622 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 31581721  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcc 194  Q
    || ||||||| | |||||||||| |||||||| ||||| ||||| | || ||||||||||  ||||||| || |||||||||||    
T  31581722 tgggcttttgggatgagtctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgccatacagtagaaccgcc 31581805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 43 - 198
Target Start/End: Original strand, 2958131 - 2958287
Alignment:
Q  43 aaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaa 140  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||||           ||||||||||||||| ||||||| |||||||||||||||||||    
T  2958131 aaattccaagacctatttgcgtgtgacaattttcagattacccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaa 2958230  T
Q  141 aattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    | |||||||||||| |||||||||||||||  ||||||| ||||||||||||||||||    
T  2958231 a-ttatcgatcgagcccggacgaccgcccggggtcgccatacggtagaaccgcccatg 2958287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 16405756 - 16405579
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnngta--aatgtgttaatgagcttttga 121  Q
    ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||||| |||||          ||  ||||||||||||||||||||     
T  16405756 gtcaatagtgtgctaaataaaattccaagacttatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatgagcttttgg 16405657  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatgg 199  Q
    ||||||||||| ||||||||||||||||| ||| |||| |||||||||   ||| ||| | |||||||||||||||||    
T  16405656 gttgagtctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtcaccatatggtagaaccgcccatgg 16405579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 8147518 - 8147359
Alignment:
Q  14 agatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaa-ttttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    ||||||| | |||||||||||| ||||||||||||| |||||||||| ||||||| || |||||||||||||||||           |||| ||||||||    
T  8147518 agatgaacccgtcaatagtgtgttaaataaaattccgagatctatttgcgtgtgagaatttttcagattgcccaaatttttctttttgtaagtgtgttaa 8147419  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |   ||||||||||| |||||||||||||| ||||||||||||| |||| ||||||||||    
T  8147418 ttgacttttgagttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccg 8147359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 45418750 - 45418591
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||  ||| |||||| ||||||| |||||||||||||||||||           |||| ||||||||    
T  45418750 gagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 45418651  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |  ||||||| ||||  ||||||| ||||||||||||||||||| |||| ||||||||||    
T  45418650 ttggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccg 45418591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 771165 - 771007
Alignment:
Q  14 agatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaat 111  Q
    ||||||| | ||||||| ||||||||||||| |||| ||| |||||| ||||||| |||||||||||||||||||           |||| |||||||||    
T  771165 agatgaacccgtcaataatgtgctaaataaagttccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 771066  T
Q  112 gagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    | ||||||  |||| ||||||||||||||| |||||||||||| |||| ||||||||||    
T  771065 gggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgcccg 771007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 44084603 - 44084762
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||  ||| |||||| ||| ||| |||||||||||||||||||           |||| ||||||||    
T  44084603 gagatgaacccgtcaatagtgtgctaaataaaattctgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 44084702  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    ||| ||||||  ||| || ||||||||||||||||||||||||| |||| |||| |||||    
T  44084703 tgaacttttggattgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccg 44084762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 2286018 - 2285954
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    |||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| ||||    
T  2286018 gtcaatagtgtgctaaataaaattccaaaacctatttgcgtgtgacaattttcagattgctcaaa 2285954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 12756837 - 12756979
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| |||  ||||| ||||||| |||||||||||||| ||||           |||| ||||||||    
T  12756837 gagatgaacccgtcaatagtgtgctaaataaaattccgagacttatttgcgtgtgagaattttcagattgctcaaatttttctttttgtaagtgtgttaa 12756936  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcga 153  Q
    |  ||||||| |||| |||||||| ||||||||||||||||||    
T  12756937 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcga 12756979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 7072644 - 7072710
Alignment:
Q  103 tgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgccc 169  Q
    |||||||||| ||||||| ||||||| ||||||  ||||||||||||||||| |||| |||||||||    
T  7072644 tgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatcgatcgagcccgggcgaccgccc 7072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 4555298 - 4555370
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccga 171  Q
    |||| |||||||| ||||||||| |||| || | |||||||||||||||||||||||||| | |||||||||||    
T  4555298 gtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcgatcgagtccag-cgaccgcccga 4555370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 8059344 - 8059472
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    |||||| ||||||||||||||||||| ||| | ||||  |||||| |||||||| |||| |||||           |||| |||||||||  |||||||     
T  8059344 gtcaattgtgtgctaaataaaattccgagaccgatttgtgtgtgagaattttcaaattggccaaatttttctttttgtaagtgtgttaattggcttttgg 8059443  T
Q  122 gttgagtctaatgtgcaaaaattatcgat 150  Q
    ||||| |||||||||||||||||||||||    
T  8059444 gttgactctaatgtgcaaaaattatcgat 8059472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 112; Significance: 3e-56; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 18009 - 17820
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||           |||||||||||||    
T  18009 gagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacatgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 17910  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatggt 200  Q
    || ||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| ||  ||||||||||||||||||||||||||||    
T  17909 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgccacacggtagaaccgcccatggt 17820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 1e-52; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 20129477 - 20129290
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||           |||||||||||||    
T  20129477 gagatgaaactgtcaatagtgtgccaaataaaattctaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 20129378  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    || ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||| ||||||| ||||||||||||    
T  20129377 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 20129290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 13012355 - 13012164
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnngta--aatgtgttaa 110  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||          ||  ||||||||||    
T  13012355 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 13012256  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatggttg 202  Q
    |||||||||  ||||| ||||||||||||||||||||||||||| |||| ||||||||||  ||||| ||||||| ||||||||||||||||    
T  13012255 tgagctttttggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatggttg 13012164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 47500940 - 47500753
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnng--taaatgtgttaa 110  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||            ||||||||||||    
T  47500940 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttcataaatgtgttaa 47500841  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||| ||||||| ||||||||||||    
T  47500840 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 47500753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 26439279 - 26439466
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnngta--aatgtgttaa 110  Q
    |||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||||||          ||  ||||||||||    
T  26439279 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 26439378  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    || ||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||  ||||| ||||||| ||||||||||||    
T  26439379 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 26439466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 34407284 - 34407471
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnngta--aatgtgttaa 110  Q
    |||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||||||          ||  ||||||||||    
T  34407284 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 34407383  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    || ||||||| |||||||||||||||||||||||||||| |||| |||| ||||||||||  ||||| ||||||| ||||||||||||    
T  34407384 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 34407471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 25930875 - 25930688
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||           |||||||||||||    
T  25930875 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaa 25930776  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    || ||||||| ||||||| ||||||||||||||||| ||||||| |||| |||||||||   ||||||| ||||||||||||||||||    
T  25930775 tgggcttttgggttgagtttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgccatacggtagaaccgcccatg 25930688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 199 - 488
Target Start/End: Complemental strand, 36234817 - 36234537
Alignment:
Q  199 gttgggagtaatttgggaagttacgaaaagtttgttcaggtgcgcaattgcacaagctgtctatgtttataaggtgtgcaattgcacaagtttgtttgaa 298  Q
    |||||||||||||||||||||| |||||||||||||| ||||||| | ||||||||||||||||||||||||| ||  |||  | |    | ||   |||    
T  36234817 gttgggagtaatttgggaagttgcgaaaagtttgttcgggtgcgctaatgcacaagctgtctatgtttataagctg--caagagaa----tctg---gaa 36234727  T
Q  299 tagctaaacaaaatatgggatgatcttcaaaacaagtaaaaggatgtgctnnnnnnnnttgataccgataagaggaagggaccgaagaaaataacaaatg 398  Q
    | | | ||||||| |||||||||||||||||||||| ||||||||||| |        ||||||  ||| |||| |  |||  || |||||  ||| |||    
T  36234726 ttgttgaacaaaaaatgggatgatcttcaaaacaagcaaaaggatgtggtaacaaaaattgataaagatgagagcacaggagtgatgaaaaggacatatg 36234627  T
Q  399 aagggaatggttggcttcaggaatttcaaacacttaaagaggtatgtttctaatttcttaatattttttcattattttccttttcatatt 488  Q
    |||||| ||||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||| |||||||||||| ||||||||||||    
T  36234626 aagggattggttggcttcaggaatttcaaaaacttcaagaggtatctttctaatttcttactatcttttcattatttgccttttcatatt 36234537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 43356071 - 43355884
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||||||||            ||||||||||||    
T  43356071 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 43355972  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    || ||||||| |||||||||||||||||||||||||||| |||| |||| |||| ||| |  ||||| ||||||| ||||||||||||    
T  43355971 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgctacacggtggaaccgcccatg 43355884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 36382346 - 36382528
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa-nnnnnnnnngtaaatgtgttaat 111  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||          ||||||||||||||    
T  36382346 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgtccaaatttttcttttgtaaatgtgttaat 36382445  T
Q  112 gagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcc 194  Q
    |  |||||  ||||||| ||||||||||||||||| ||||||| |||| ||||||||||  ||||||| ||||||||||||||    
T  36382446 ggactttttggttgagtttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgccatacggtagaaccgcc 36382528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 29319716 - 29319892
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    ||||||||||||||||||||||||||||||  |||||  ||||||||||||||||||||| ||||           ||||||||||||||| | |||||     
T  29319716 gtcaatagtgtgctaaataaaattccaagacttatttgtgtgtgacaattttcagattgctcaaatttttctttttgtaaatgtgttaatgggattttgg 29319815  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||| |  ||| ||| ||||||||||||||||||    
T  29319816 gttgagtctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtcaccatacggtagaaccgcccatg 29319892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 24 - 195
Target Start/End: Complemental strand, 40529171 - 40528996
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||||||||| |||||| | |||||||||||||| |||| |||||           ||||||||||||||||| ||||      
T  40529171 gtcaatagtgtgctaaataaaattccaagacctatttgcatgtgacaattttcaaattgtccaaatttttctttttgtaaatgtgttaatgagtttttag 40529072  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgac--cgcccgaagtcgccacacggtagaaccgccc 195  Q
    ||||||| |||||||||||||||||||||||||||||||||||  |||||   ||||||| |||||||||||||||    
T  40529071 gttgagtttaatgtgcaaaaattatcgatcgagtccggacgacctcgcccagggtcgccatacggtagaaccgccc 40528996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 30216742 - 30216901
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||           |||| ||||||||    
T  30216742 gagatgaacccgtcaatagtgtgctaaataaaattccgagatctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 30216841  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    | |||||||| |||| |||||||||||||||||||||||||||| |||| ||||||||||    
T  30216842 ttagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccg 30216901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 17511245 - 17511417
Alignment:
Q  25 tcaatagtgtgctaaataaaatt-ccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    |||||| |||||||||||||||| |||||| |||||| ||||| |||||||||| ||||||||||           ||||||||||||||| |||||||     
T  17511245 tcaataatgtgctaaataaaatttccaagacctatttgcgtgtaacaattttcaaattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 17511344  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgccc 195  Q
    ||||||||||||||||||||||||||||||||||| || |||||||| |  ||||||| |||||||||||||||    
T  17511345 gttgagtctaatgtgcaaaaattatcgatcgagtctgggcgaccgccag-ggtcgccatacggtagaaccgccc 17511417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 25 - 201
Target Start/End: Original strand, 43143596 - 43143774
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttgag 122  Q
    ||||| ||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||           |||| |||||||||  ||||||| |    
T  43143596 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 43143695  T
Q  123 ttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatggtt 201  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||  |||| |  |||||  ||||||||||||||    
T  43143696 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgcccatggtt 43143774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 25 - 170
Target Start/End: Original strand, 42333788 - 42333935
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttgag 122  Q
    ||||| ||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||           |||| |||||||||  ||||||| |    
T  42333788 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttggg 42333887  T
Q  123 ttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||    
T  42333888 ttgagtctaatgtgcaaaaattatcgattgagcccggacgaccgcccg 42333935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 3292907 - 3293055
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||           |||| |||||||||  |||||||     
T  3292907 gtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgg 3293006  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |||| |||||||| ||||||||||||||||||| |||| ||||||||||    
T  3293007 gttgggtctaatgggcaaaaattatcgatcgagcccgggcgaccgcccg 3293055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 29995983 - 29996138
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||| ||||||||||| ||| |||||| ||||  | |||||||||||||||||||           |||||||||||||    
T  29995983 gagatgaatccgtcaatagtgtgcttaataaaattccgagaactatttgcgtgcaagaattttcagattgcccaaatttttcttttcgtaaatgtgttaa 29996082  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccg 166  Q
    ||  |||||  |||||||||||||| ||||||||||||||||||||||||||||||    
T  29996083 tggactttttggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccg 29996138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 48989495 - 48989330
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| ||| ||| |||||||||||||||||||           |||| ||||||||    
T  48989495 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 48989396  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcg 176  Q
    ||  ||||||||||| || ||||||||||||||||||||||||  ||||  ||||||||| |||||    
T  48989395 tggacttttgagttgggtttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcg 48989330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 6235687 - 6235612
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  6235687 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaa 6235612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 50205079 - 50205236
Alignment:
Q  15 gatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaa--annnnnnnnngtaaatgtgttaatg 112  Q
    |||||| | |||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||            |||| |||||||||     
T  50205079 gatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgtccaattttttctttttgtaagtgtgttaatt 50205178  T
Q  113 agcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
     ||||||| ||||  |||||||||||||||||||||||||||  ||| ||||||||||    
T  50205179 ggcttttgggttggatctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccg 50205236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 24 - 170
Target Start/End: Original strand, 6690246 - 6690394
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||| | ||| |||||| ||||||| ||||||||| |||||||||           |||| |||||||||  |||||||     
T  6690246 gtcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagtttgcccaaatttttctttttgtaagtgtgttaattggcttttgg 6690345  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |||| |||||||| ||||||||||||||||||| |||| ||||||||||    
T  6690346 gttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccg 6690394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 10352902 - 10353041
Alignment:
Q  31 gtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttgagttgagt 128  Q
    ||||||||||||||||||| ||| |||||| ||||| | |||||||||||||||||||           |||||||||||||||  |||||  |||| ||    
T  10352902 gtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgggt 10353001  T
Q  129 ctaatgtgcaaaaattatcgatcgagtccggacgaccgcc 168  Q
    |||||||||||||||||||||| ||| |||| ||||||||    
T  10353002 ctaatgtgcaaaaattatcgattgagcccgggcgaccgcc 10353041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 44156818 - 44156681
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| |||| || ||||||||||||| |||||           |||| ||||||||    
T  44156818 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgagagaattttcagattgtccaaaattttctttttgtaagtgtgttaa 44156719  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcg 148  Q
    |  ||||||| |||| ||||||||||||||||||||||    
T  44156718 ttggcttttgggttgggtctaatgtgcaaaaattatcg 44156681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 26 - 178
Target Start/End: Complemental strand, 26448206 - 26448053
Alignment:
Q  26 caatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn-gtaaatgtgttaatgagcttttgagtt 124  Q
    |||||||||||||||||||||||| | | ||||||  || ||| |||||||||||||||||||          |||| ||||||||||  |||||| |||    
T  26448206 caatagtgtgctaaataaaattccgaaacctatttgtgtatgagaattttcagattgcccaaattttttttttgtaagtgtgttaatggacttttgggtt 26448107  T
Q  125 gagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgcc 178  Q
       | |||||||||||||||||||||||||||||||||| ||| || |||||||    
T  26448106 agatttaatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgcc 26448053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 30077647 - 30077797
Alignment:
Q  29 tagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttgagttga 126  Q
    ||||||||||||||||||| ||||| ||||||  |||| | ||||||||||||| |||||           |||||||||||||||| |||||  ||||     
T  30077647 tagtgtgctaaataaaatttcaagacctatttgtgtgtaaaaattttcagattgtccaaatttttctttttgtaaatgtgttaatgaactttttggttgg 30077746  T
Q  127 gtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgc 177  Q
    ||||||||||||||| |||||||| ||| | || ||||||||||| |||||    
T  30077747 gtctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcgc 30077797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 36216881 - 36216809
Alignment:
Q  199 gttgggagtaatttgggaagttacgaaaagtttgttcaggtgcgcaattgcacaagctgtctatgtttataag 271  Q
    ||||||| |||||||||||||| | |||||||||||||| ||| ||| ||||||||||| |||||||||||||    
T  36216881 gttgggaataatttgggaagttgcaaaaagtttgttcagttgcacaaatgcacaagctgcctatgtttataag 36216809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 48130046 - 48129978
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccg 166  Q
    |||| |||||||||||||||||| |||| ||||||| |||||||||||||||||||| |||| ||||||    
T  48130046 gtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccggtcgaccg 48129978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 201
Target Start/End: Complemental strand, 27363441 - 27363338
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccat 197  Q
    |||| |||||||||| ||||||| |||| | ||||| ||||||||   ||||||||| |||| ||||||||||| ||||||| |||||| |||||||| |    
T  27363441 gtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccgcccct 27363342  T
Q  198 ggtt 201  Q
    ||||    
T  27363341 ggtt 27363338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 13392893 - 13392956
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    ||||||||||||||||||||||| | ||| |||||| ||||||| |||||| ||||||||||||    
T  13392893 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaa 13392956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 13396032 - 13396095
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    ||||||||||||||||||||||| | ||| |||||| ||||||| |||||| ||||||||||||    
T  13396032 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaa 13396095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 28877262 - 28877325
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    ||||||||||||||||||||||||| ||| |||||| ||||||| |||||| ||||| ||||||    
T  28877262 tcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagatttcccaaa 28877325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 35546108 - 35546045
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    ||||||||||||||||||||||||  ||| | |||| ||||||| |||||||||||||||||||    
T  35546108 tcaatagtgtgctaaataaaattcagagacccatttgcgtgtgagaattttcagattgcccaaa 35546045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 486 - 559
Target Start/End: Complemental strand, 36234505 - 36234428
Alignment:
Q  486 attgaaactatattgcatgtatgaatgatacatt-taaaaga---atatagatgatattatgaaacaattatgtgccc 559  Q
    |||||||||||||||||||||||||||| | ||| ||||| |   |||||||||||||||||||||| ||||||||||    
T  36234505 attgaaactatattgcatgtatgaatgacaaattgtaaaaaatggatatagatgatattatgaaacatttatgtgccc 36234428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 45194256 - 45194195
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccgg 159  Q
    |||| ||||||||||  |||||| ||||||| ||||||||||||||||| ||||||||||||    
T  45194256 gtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgg 45194195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 30110036 - 30109968
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccg 166  Q
    |||| ||||||||||  |||| |  ||| ||||||||||||||||||||||||||||||||| ||||||    
T  30110036 gtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccg 30109968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 1817884 - 1817809
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    |||||||| | | |||||||||| ||||||||||||| ||| |||||| ||||| | |||||| ||||||||||||    
T  1817884 gagatgaatccgacaatagtgtgttaaataaaattccgagacctatttgcgtgtaagaatttttagattgcccaaa 1817809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 633 - 669
Target Start/End: Complemental strand, 36234394 - 36234358
Alignment:
Q  633 caaatgagtgtggtcaacctttgtagaacacactctt 669  Q
    ||||||||||||||||||| |||||||||||||||||    
T  36234394 caaatgagtgtggtcaaccattgtagaacacactctt 36234358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 28877343 - 28877390
Alignment:
Q  104 gtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatc 151  Q
    |||||||| |||||||  ||||| ||||||||||||||||||||||||    
T  28877343 gtgttaattagcttttaggttgaatctaatgtgcaaaaattatcgatc 28877390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 527 - 557
Target Start/End: Original strand, 35901025 - 35901055
Alignment:
Q  527 atatagatgatattatgaaacaattatgtgc 557  Q
    |||||||||||||||||||||||||||||||    
T  35901025 atatagatgatattatgaaacaattatgtgc 35901055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 347
Target Start/End: Complemental strand, 36216776 - 36216742
Alignment:
Q  313 atgggatgatcttcaaaacaagtaaaaggatgtgc 347  Q
    |||||||||||||||||||||| ||||||||||||    
T  36216776 atgggatgatcttcaaaacaaggaaaaggatgtgc 36216742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 443
Target Start/End: Complemental strand, 36216707 - 36216646
Alignment:
Q  382 gaagaaaataacaaatgaagggaatggttggcttcaggaatttcaaacacttaaagaggtat 443  Q
    ||||||||  || |||||||| | |||||||||||||||||||||||  ||| |||||||||    
T  36216707 gaagaaaaggactaatgaaggaattggttggcttcaggaatttcaaaagcttcaagaggtat 36216646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 480457 - 480644
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnngta--aatgtgttaa 110  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||          ||  ||||||||||    
T  480457 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 480556  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||| ||||||| ||||||||||||    
T  480557 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 480644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 3e-50; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 398784 - 398597
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnngta--aatgtgttaa 110  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||          ||  ||||||||||    
T  398784 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 398685  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||| ||||||| ||||||||||||    
T  398684 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 398597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 34948769 - 34948945
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||           ||||||||||||||| |||||||     
T  34948769 gtcaatagtgtgctaaataaaatttcaagatctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgg 34948868  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    ||||||||||||||||||||||||||||||||| | || |||||||| |  ||||||| ||||||||||||||||||    
T  34948869 gttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccatacggtagaaccgcccatg 34948945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 13837977 - 13837801
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||           ||||||||||| ||| |||||||     
T  13837977 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttgatgtgcttttgg 13837878  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    |||||||||||||| |||||||||||||||||  |||  ||| ||||||  ||||||| ||||||||||||||||||    
T  13837877 gttgagtctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgccatacggtagaaccgcccatg 13837801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 305 - 559
Target Start/End: Original strand, 25467229 - 25467477
Alignment:
Q  305 aacaaaatatgggatgatcttcaaaacaagtaaaaggatgtgctnnnnnnnnttgataccgataagaggaagggaccgaagaaaataacaaatgaaggga 404  Q
    ||||||| |||||||||||||||||||||| |||||||||||||        ||||||  ||| |||| |  |||  || |||||  |||||||||||||    
T  25467229 aacaaaaaatgggatgatcttcaaaacaaggaaaaggatgtgctaacaaaaattgataaagatgagagcacaggagtgatgaaaaggacaaatgaaggga 25467328  T
Q  405 atggttggcttcaggaatttcaaacacttaaagaggtatgtttctaatttcttaatattttttcattattttccttttcatattgaaactatattgcatg 504  Q
     |||||||||||||||||||||||||||| |||||||||||| |||||||||||        |||  | |    | || | || ||||||||||||||||    
T  25467329 ttggttggcttcaggaatttcaaacacttcaagaggtatgttgctaatttctta--------tca--actgaagtgtttacatagaaactatattgcatg 25467418  T
Q  505 tatgaatgatacatttaaaaga----atatagatgatattatgaaacaattatgtgccc 559  Q
    ||||||||| | ||||||||||    |||||||||||||||||||||||||||||||||    
T  25467419 tatgaatgacaaatttaaaagaatggatatagatgatattatgaaacaattatgtgccc 25467477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 18339273 - 18339114
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| | ||||| |||||||||||||||||||           |||| ||||||||    
T  18339273 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaa 18339174  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |  ||||||   ||| |||||||||||||||||||| ||||||| |||| ||||||||||    
T  18339173 ttggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccg 18339114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 28996897 - 28996738
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||           |||| ||||||||    
T  28996897 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 28996798  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |   |||||  |||| |||||||| |||||||||||||||||||  ||| ||||||||||    
T  28996797 ttgacttttaggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccg 28996738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 29 - 170
Target Start/End: Complemental strand, 29743434 - 29743291
Alignment:
Q  29 tagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttgagttga 126  Q
    ||||||||||||||||||||| ||| |||||| ||||| | |||||||||||||||||||           |||||||||||||||| |||||  ||||     
T  29743434 tagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttctttctgtaaatgtgttaatgaactttttggttgg 29743335  T
Q  127 gtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |||||||||||||||||||||||| ||| |||| | ||||||||    
T  29743334 gtctaatgtgcaaaaattatcgattgagcccgggcaaccgcccg 29743291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 31028451 - 31028512
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccgg 159  Q
    ||||||||||||||||||||||  ||||  ||||||||||||||||||||||||||||||||    
T  31028451 gtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgg 31028512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 33229336 - 33229484
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | | ||||||||||||||||||||| || |||  ||||||||||| | |||||||||||||||||||           | |||||||||||    
T  33229336 gagatgaatccggcaatagtgtgctaaataaaatcccgagacttatttacgtgtaagaattttcagattgcccaaatttttctttttggaaatgtgttaa 33229435  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccgg 159  Q
    ||  |||||| |||| ||||||||| ||||||| |||||||||| ||||    
T  33229436 tggacttttgggttgggtctaatgtacaaaaatgatcgatcgagcccgg 33229484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 25467132 - 25467203
Alignment:
Q  199 gttgggagtaatttgggaagttacgaaaagtttgttcaggtgcgcaattgcacaagctgtctatgtttataa 270  Q
    |||||||||||||||||||||| | ||| |||||||||| ||| ||| ||||||||||| |||| |||||||    
T  25467132 gttgggagtaatttgggaagttgcaaaatgtttgttcagttgcacaaatgcacaagctgcctatatttataa 25467203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 29135149 - 29135112
Alignment:
Q  228 gtttgttcaggtgcgcaattgcacaagctgtctatgtt 265  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29135149 gtttgttcaggtgcgcaattgcacaagctgtctatgtt 29135112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 24697904 - 24697965
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccgg 159  Q
    |||| |||||||||| ||||||| |||| | |||||||| ||||||||||||| ||| ||||    
T  24697904 gtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgg 24697965  T

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Target: chr1 (Bit Score: 102; Significance: 3e-50; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 26144422 - 26144235
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnngta--aatgtgttaa 110  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||          ||  ||||||||||    
T  26144422 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 26144323  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||| ||||||| ||||||||||||    
T  26144322 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgcccatg 26144235  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 7433601 - 7433425
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    |||||||||||||||||||||||| ||||| ||||||  ||||||||||||| ||||||||||||           ||||||||||||||| |||||||     
T  7433601 gtcaatagtgtgctaaataaaatttcaagacctatttgtgtgtgacaatttttagattgcccaaaattttctttttgtaaatgtgttaatgggcttttgg 7433502  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    ||||||||||||||||||||||||| |||||||  ||| ||||||||||  || |||| ||||||||||||||||||    
T  7433501 gttgagtctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgccatacggtagaaccgcccatg 7433425  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 13 - 191
Target Start/End: Original strand, 32982056 - 32982236
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| |||||||||| ||||||||||||||||||||| ||||||  |||||||||||||||||||| |||||           |||||| ||||||    
T  32982056 gagatgaatctgtcaatagagtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgtccaaatttttctttttgtaaatatgttaa 32982155  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaacc 191  Q
    || ||||||  |||| |||||||||||||||||||||||||| | |||  ||||||||||  ||||||| |||||||||||    
T  32982156 tgggcttttaggttgggtctaatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgccatacggtagaacc 32982236  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 42310941 - 42311125
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| | |||||||| || |||||||||||| |||||  ||||| |||||||||||||||||||||||||||           |||||||||||||    
T  42310941 gagatgaacccgtcaatagcgtactaaataaaatttcaagacttatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 42311040  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgccc 195  Q
     | ||||||| ||||||||||||||||||||||||||||||||| |||| ||| || | |  ||||||| |||||||||||||||    
T  42311041 cgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtctggggtcgccatacggtagaaccgccc 42311125  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 13 - 153
Target Start/End: Complemental strand, 3829150 - 3829009
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| ||| ||| |||||||||||||||||||           |||| ||||||||    
T  3829150 gagatgaacccgtcaatagtgtgctaaataaaattcc-agacctatttgcgtatgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaa 3829052  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcga 153  Q
    ||| |||||| |||| || ||||||||||||||||||||||||    
T  3829051 tgaacttttgggttgggtttaatgtgcaaaaattatcgatcga 3829009  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 24 - 198
Target Start/End: Complemental strand, 35907708 - 35907532
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttga 121  Q
    ||||||| |||||||||||||||||| ||| |||||| ||||||| |||||||||||| ||||||           |||| |||  ||||  |||||||     
T  35907708 gtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaaattttctttttgtaagtgtactaattggcttttgg 35907609  T
Q  122 gttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    |||| ||||||||||||||||||||||||| || |||| ||||||||||| ||||||   ||||  |||||||||||    
T  35907608 gttgggtctaatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcccatg 35907532  T

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Target: chr1; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 321377 - 321544
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| | ||||||| |||| ||||||||||||| ||| |||||| | | ||| |||||||||||||||||||           |||| ||||||||    
T  321377 gagatgaacccgtcaataatgtgttaaataaaattccgagacctatttgcatatgagaattttcagattgcccaaatttttctttttgtaactgtgttaa 321476  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgcc 178  Q
    ||  |||||| ||||  |||||||  |||||||||||||||||| ||||||||||||||||| |||||    
T  321477 tggacttttgggttggatctaatgcacaaaaattatcgatcgagcccggacgaccgcccgaaatcgcc 321544  T

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Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 98 - 198
Target Start/End: Complemental strand, 23313319 - 23313218
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaa-aaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgccca 196  Q
    |||||||||||||||| |||||  |||||||||||||||||| |||| ||| |||||| |||| | |||||||||  |||||| ||||||||||||||||    
T  23313319 gtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccgagatcgccatacggtagaaccgccca 23313220  T
Q  197 tg 198  Q
    ||    
T  23313219 tg 23313218  T

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Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 9770526 - 9770454
Alignment:
Q  199 gttgggagtaatttgggaagttacgaaaagtttgttcaggtgcgcaattgcacaagctgtctatgtttataag 271  Q
    |||||||||||||||||||||| ||||||||||||| || ||| ||| ||||||||||| |||||||||||||    
T  9770526 gttgggagtaatttgggaagttgcgaaaagtttgttgagttgcacaaatgcacaagctgcctatgtttataag 9770454  T

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Target: chr1; HSP #10
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 17445479 - 17445405
Alignment:
Q  14 agatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    ||||||| | ||||||| |||||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||    
T  17445479 agatgaacccgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaa 17445405  T

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Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 9770429 - 9770386
Alignment:
Q  305 aacaaaatatgggatgatcttcaaaacaagtaaaaggatgtgct 348  Q
    |||||||||||||||||||||||||||||| ||||||| |||||    
T  9770429 aacaaaatatgggatgatcttcaaaacaaggaaaaggacgtgct 9770386  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 195
Target Start/End: Original strand, 41972362 - 41972458
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgccc 195  Q
    |||| |||||||||  ||||||  ||||  ||||||||||||||||||||||||||| || | ||||||||||  |||||   ||||| |||||||||    
T  41972362 gtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcgatcgag-ccaggcgaccgcccggggtcgctggacggtggaaccgccc 41972458  T

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Target: scaffold2142 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 689 - 499
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnngta--aatgtgttaa 110  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||          ||  ||||||||||    
T  689 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 590  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatggtt 201  Q
    |||||||||  ||||||||||||||||||||||||||||||||| |||| ||||||||||   |||| ||||||| |||||||||||||||    
T  589 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgctacacggtggaaccgcccatggtt 499  T

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Target: chr8 (Bit Score: 96; Significance: 1e-46; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 39914681 - 39914495
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnng-taaatgtgttaat 111  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||           |||||||||||||    
T  39914681 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacttgtgacaattttcaaattgcccaaattttttttttataaatgtgttaat 39914582  T
Q  112 gagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatg 198  Q
    ||||||||  ||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||| ||||||| |||||| |||||    
T  39914581 gagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgctacacggtggaaccgtccatg 39914495  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 29728386 - 29728570
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| | ||||||||||||||||||||||||| |||| |||||| ||||| |||||||||||||||||||||           |||||||||||||    
T  29728386 gagatgaacccgtcaatagtgtgctaaataaaattcgaagacctatttgcgtgtcacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 29728485  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgccc 195  Q
    |||||||||| |||||||||||||||||||| ||||||||||||  ||| |||||| |||  ||||||| |||||||||||||||    
T  29728486 tgagcttttgggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgccatacggtagaaccgccc 29728570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 3648794 - 3648985
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||||| | ||| || |||||||||||||||||||||||||||           |||||||||||||    
T  3648794 gagatgaacccgtcaatagtgtgctaaataaaattccaaaacctacttgcgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaa 3648893  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccg-cccgaagtcgccacacggtagaaccgcccatggttg 202  Q
    || ||||||| ||||||||||||||| ||||||||||||||||| |||| |||| | |||| | |||||| ||||||||||||||| ||||||    
T  3648894 tgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgactgtcccgga-tcgccatacggtagaaccgcccctggttg 3648985  T

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Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 194
Target Start/End: Complemental strand, 15838441 - 15838270
Alignment:
Q  24 gtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa-nnnnnnnnngtaaatgtgttaatgagcttttgag 122  Q
    |||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||          |||||||||||||||  |||||  |    
T  15838441 gtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgaaaattttcagattgcccaaatttttcttttgtaaatgtgttaatggactttttgg 15838342  T
Q  123 ttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcc 194  Q
    |||||| |||||||||||||||||| |||||| ||||  |||||||||  ||||||| ||||||||||||||    
T  15838341 ttgagtttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgccatacggtagaaccgcc 15838270  T

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Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 13 - 170
Target Start/End: Original strand, 16788025 - 16788184
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||||||| |||||| ||||||| | |||| ||||||||||||           |||| ||||||||    
T  16788025 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagagttttaagattgcccaaatttttctttttgtaagtgtgttaa 16788124  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |  ||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  16788125 ttggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccg 16788184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 25 - 199
Target Start/End: Original strand, 34136837 - 34137013
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttgag 122  Q
    ||||| ||||||||||||||||| | ||| |||||| ||||||| |||||||||||||||||||           |||| |||||||||   |||||| |    
T  34136837 tcaattgtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttggg 34136936  T
Q  123 ttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgccacacggtagaaccgcccatgg 199  Q
    |||||||||||||||||||||||||||||||| |||| ||||||| ||  ||||||| |||||  |||| |||||||    
T  34136937 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaaccacccatgg 34137013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 4404163 - 4404018
Alignment:
Q  25 tcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaatgagcttttgag 122  Q
    ||||| ||||||||||||||||||| ||| |||||| ||||||| |||||| ||||||||||||           |||| | |||||||  ||||||| |    
T  4404163 tcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgtaagtatgttaattggcttttggg 4404064  T
Q  123 ttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcc 168  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||    
T  4404063 ttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcc 4404018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 23402275 - 23402116
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||| ||||||||||| | ||| |||||| ||||||| |||||||||||||||||||           |||| ||||||||    
T  23402275 gagatgaaccagtcaatagtgtgttaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 23402176  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |  ||||||| |||| ||||||| |||||| ||||||||||||| |||| ||||||||||    
T  23402175 ttggcttttgggttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccg 23402116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 36408631 - 36408551
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgaagtcgcc 178  Q
    |||||||||||||||  |||||| ||||  ||||||||||||||||||||||||||| |||| ||||||||||| ||||||    
T  36408631 gtaaatgtgttaatggacttttgggttggatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgcc 36408551  T

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Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 9877387 - 9877312
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    ||||||||  || |||||||||||||||||||||| | ||| |||||| | ||||| |||||||||||||||||||    
T  9877387 gagatgaatttgacaatagtgtgctaaataaaatttcgagacctatttgcatgtgagaattttcagattgcccaaa 9877312  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 103 - 154
Target Start/End: Original strand, 40470585 - 40470636
Alignment:
Q  103 tgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatcgag 154  Q
    ||||||||||  ||||||| ||| ||||||||||||||||||||||||||||    
T  40470585 tgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgag 40470636  T

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Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 42231104 - 42231029
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa 88  Q
    |||||||| | |||||||||||||||||||||||||  ||| |||||| | | ||| |||||||| ||||||||||    
T  42231104 gagatgaatccgtcaatagtgtgctaaataaaattctgagacctatttgcatatgagaattttcaaattgcccaaa 42231029  T

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Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 3435349 - 3435296
Alignment:
Q  98 gtaaatgtgttaatgagcttttgagttgagtctaatgtgcaaaaattatcgatc 151  Q
    |||| |||||||||| | ||||| |||| |||||||||||||||||||||||||    
T  3435349 gtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcgatc 3435296  T

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Target: scaffold0041 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 53092 - 52941
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| | ||||| ||||||||||||| |||||           |||||||||||||    
T  53092 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaa 52993  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacg 162  Q
    |  ||||||| ||| | ||||||||||||||||||||||||||| |||||||    
T  52992 ttggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccggacg 52941  T

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Target: scaffold0502 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 170
Target Start/End: Complemental strand, 5397 - 5238
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaa--nnnnnnnnngtaaatgtgttaa 110  Q
    |||||||| | |||||||||||||||||||||||||| ||| |||||| | ||||| |||||||||||||||||||           |||| ||||||||    
T  5397 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaa 5298  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccg 170  Q
    |  ||||||   ||| |||||||||||||||||||| ||||||| |||| ||||||||||    
T  5297 ttggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccg 5238  T

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Target: scaffold0154 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 31647 - 31492
Alignment:
Q  13 gagatgaaactgtcaatagtgtgctaaataaaattccaagatctatttacgtgtgacaattttcagattgcccaaannnnnnnnn--gtaaatgtgttaa 110  Q
    |||||||| ||||||||||||||| |||||||||| | ||| |||||| || |||| ||||||||||||| |||||           |||| ||||||||    
T  31647 gagatgaacctgtcaatagtgtgcaaaataaaattactagacctatttgcgagtgagaattttcagattgtccaaatttttctttttgtaagtgtgttaa 31548  T
Q  111 tgagcttttgagttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccg 166  Q
    || ||||||| |||| ||||| |||||||||||||||||||||| |||| ||||||    
T  31547 tgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgaccg 31492  T

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