View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11786_low_2 (Length: 613)

Name: NF11786_low_2
Description: NF11786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11786_low_2
NF11786_low_2
[»] chr3 (28 HSPs)
chr3 (17-389)||(22367985-22368357)
chr3 (17-389)||(22468006-22468393)
chr3 (17-389)||(22630496-22630884)
chr3 (17-385)||(22358060-22358443)
chr3 (17-373)||(22353868-22354242)
chr3 (17-389)||(22442797-22443184)
chr3 (18-386)||(22635562-22635945)
chr3 (17-371)||(22431231-22431578)
chr3 (17-371)||(22458547-22458916)
chr3 (17-371)||(22481528-22481897)
chr3 (21-386)||(22436696-22437076)
chr3 (285-389)||(22632206-22632310)
chr3 (17-158)||(30989363-30989504)
chr3 (21-157)||(22615330-22615466)
chr3 (17-183)||(22115327-22115493)
chr3 (21-155)||(21930691-21930825)
chr3 (543-590)||(22437914-22437961)
chr3 (493-585)||(22439904-22439998)
chr3 (385-438)||(22359155-22359208)
chr3 (385-438)||(22369057-22369110)
chr3 (21-157)||(18967049-18967185)
chr3 (17-91)||(22034851-22034925)
chr3 (547-583)||(22449356-22449392)
chr3 (253-352)||(21945682-21945781)
chr3 (306-385)||(22615621-22615700)
chr3 (294-352)||(2818650-2818708)
chr3 (253-387)||(21937176-21937310)
chr3 (294-355)||(2797451-2797512)
[»] chr1 (4 HSPs)
chr1 (18-150)||(34989492-34989624)
chr1 (35-150)||(34975657-34975772)
chr1 (36-150)||(34980437-34980551)
chr1 (255-355)||(34980217-34980317)
[»] chr4 (1 HSPs)
chr4 (98-163)||(29610706-29610771)
[»] chr5 (1 HSPs)
chr5 (33-89)||(40580264-40580320)
[»] scaffold1439 (1 HSPs)
scaffold1439 (36-127)||(1714-1805)
[»] chr8 (1 HSPs)
chr8 (304-352)||(27294606-27294654)


Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 22367985 - 22368357
Alignment:
Q  17 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacact 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22367985 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagaaaattcaatatcattccaaaaatgtgagtcccatacatcatcaaacact 22368084  T
Q  117 acaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggaggacctttcccttgttgca 216  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22368085 acaacgtacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggaggacatttcccttgttgca 22368184  T
Q  217 gtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttggttgtcaaaaacttt 316  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||||| ||||||||||||||||||||||||||||||||    
T  22368185 gtatgtccttcagcaatttttctttattatatggtcgagaaaccgtgatccataaacgacaatcaaagtgtttaacgaccttttggttgtcaaaaacttt 22368284  T
Q  317 cttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttccctct 389  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22368285 cttggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcggtgtgctcttccctct 22368357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 22468006 - 22468393
Alignment:
Q  17 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacact 116  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||    
T  22468006 gtttctcgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcataccaaaaatgtgaatcccatacatcatcaaacact 22468105  T
Q  117 acaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggaggacctttcccttgtt--- 213  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||| ||||| ||||| ||||||||| ||| ||||||||       
T  22468106 ataacatacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatctgatggagactctgaggaggatcttccccttgttgtt 22468205  T
Q  214 ------------gcagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttg 301  Q
                |||  || ||| ||| |||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22468206 tgtaaatatcgagcaaaatttccctcaacaatttttctatattgtatggtcgagacaccgtgatccatacatgacaatcaaaatgtttaacgaccttttg 22468305  T
Q  302 gttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttccctct 389  Q
    ||||||||||||||||||||| | |||| ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||    
T  22468306 gttgtcaaaaactttcttggctatagtggtttttcccagtcctcccattccaactatggagacaacggtgcgctctgctcttccctct 22468393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 22630496 - 22630884
Alignment:
Q  17 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |  |||||||||||||||||||||    
T  22630496 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcataccaaaattgtgcctcccatacatcatcaaacact 22630595  T
Q  117 ac-aacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggaggacctttcccttgtt-- 213  Q
    || ||| ||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||| ||||||||||||||| ||||||||||||      
T  22630596 acaaacgtacctttttccttgcaagtagtttctcacttcatcaactaatggctttcgatccatttgatggagactttgaggaggatctttcccttgttgt 22630695  T
Q  214 -------------gcagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgacctttt 300  Q
                 |||  |||||| ||| |||| ||||| |||| |||||||||||||||||||||||| ||||||| ||||| |||||||||||||||     
T  22630696 ttgtaaatctcgagcaaaatgtccctcaacaatgtttctatattgtatggtcgagacaccgtgatccattcatgacaatcaaagtgtttaacgacctttc 22630795  T
Q  301 ggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttccctct 389  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| | |||||||||||||    
T  22630796 ggttgtcaaaaattttcttggcaagagtggttttccccagtcctcccattccaacaatagagacaactgtgcgttctgctcttccctct 22630884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 22358060 - 22358443
Alignment:
Q  17 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacact 116  Q
    ||||||||| |||||||||||| || |||| |||||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||||||||||    
T  22358060 gtttcttgtagtgattaatatcctagaaccctttttgttatcaatcatagcaaattcaatatcatgcaaaaaatgtgactcccatacatcatcaaacact 22358159  T
Q  117 acaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggaggacctttcccttgtt--- 213  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||||||| | ||||| ||||||||| |||||| |||||       
T  22358160 acaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgacggagactctgaggaggaactttcctttgttgtt 22358259  T
Q  214 ------------gcagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttg 301  Q
                |||  |||||| ||| || ||||||| |||| ||||||||||||||||| ||||||||| |||  ||||| ||||| ||||||||| |    
T  22358260 tgtaaaactcgagcataatgtccctcaacactttttctgtattgtatggtcgagacaccgtaatccatacacgacgatcaaagtgttttacgacctttgg 22358359  T
Q  302 gttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttcc 385  Q
    |||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||| ||| || | |||||||||    
T  22358360 gttgtcaaaaactttcttcgctagagtggtttttcccagtcctcccattccaacaatggagacaattgtccggtctgctcttcc 22358443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 17 - 373
Target Start/End: Original strand, 22353868 - 22354242
Alignment:
Q  17 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaa-tatcattccaaaaatgcgagtcccatacatcatcaaacac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||| || ||| |||||| |||||||||    
T  22353868 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaaatatcttgccaaaaatgtgactcctatacattatcaaacac 22353967  T
Q  116 tacaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggaggacctttcccttgtt-- 213  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||  ||||| |||||||||||| ||||| ||||||||| |||||| | |||      
T  22353968 tacaacgtacctttttccttgcaagttgtttctcacttcatcaactaatggctttcgatccatttgatggagactctgaggaggatctttccttcgttgt 22354067  T
Q  214 -------------gcagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatcc--atacatgacagtcaaaatgtttaacgacctt 298  Q
                 |||  |||||| ||| || ||||||| | || ||||||||||| ||||||||||  |||||| ||| ||||| |  ||||| |||||    
T  22354068 ttgtaaatctccagcaaaatgtccctcaacactttttctatgttgtatggtcgagataccgtgatccatatacataacaatcaaagttcttaactacctt 22354167  T
Q  299 ttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcg 373  Q
    ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22354168 ttggttgtcaaaaacttttctggctagagtggtttttcccagtcctcccattccaacaatggagacaactgtgcg 22354242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 22442797 - 22443184
Alignment:
Q  17 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacact 116  Q
    ||||||||| |||||||||||| || |||| |||||||||||||||||||||||||||||||||| | ||||||| || |||||||||||||||||||||    
T  22442797 gtttcttgtagtgattaatatcctagaaccctttttgttatcaatcatagcaaattcaatatcatgcaaaaaatgtgactcccatacatcatcaaacact 22442896  T
Q  117 acaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggaggacctttcccttgtt--- 213  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||||||||| ||||| ||||||||| |||||| |||||       
T  22442897 acaacataccttttttcttgcaagtagtttctcacttcatcaactaatgactgtcgatccatttgatggagactctgaggaggaactttcctttgttgtt 22442996  T
Q  214 ------------gcagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttg 301  Q
                |||  |||||| ||| || ||||||  ||||  ||| | |||||||| ||||||||| | |||||||||| || ||||| ||||||||    
T  22442997 tgtaaaactcgagcataatgtccctcaacactttttcaatattgaatgattgagacaccatgatccataaaagacagtcaaagtgcttaactaccttttg 22443096  T
Q  302 gttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttccctct 389  Q
    ||||||||||| ||   |||| |||||| ||||||||| ||||||||||||||||||||||||||||||||| | | |||||||||||    
T  22443097 gttgtcaaaaatttgtctggctagagtggtttttcccaatcctcccattccaacaatggagacaactgtgcggtcttctcttccctct 22443184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 22635562 - 22635945
Alignment:
Q  18 tttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacacta 117  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||  ||||||||| || ||||||||||||||||||||||    
T  22635562 tttcttgttgtgattaatatcctacaactatttttgttatcaatcatagcaaattcaatatcagaccaaaaatgtgactcccatacatcatcaaacacta 22635661  T
Q  118 caacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggaggacctttcccttgtt---- 213  Q
     |||||||||||||||||| |||| |||||||||||||||||||||| |||||| |||||||||||| ||||| | ||||||| ||| ||||||||        
T  22635662 aaacatacctttttccttgaaagtggtttctcacttcatcaactaatgactttcgatccatttgatggagactctcaggaggaacttccccttgttgttt 22635761  T
Q  214 -----------gcagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttgg 302  Q
               |||  |||||   || || ||||||| |||| ||||||||||||||||| ||||||||| |||| ||||| | ||| ||||||||| ||    
T  22635762 gtaaaactcgagcataatgtctcgcaacactttttctgtattgtatggtcgagacaccgtaatccatacacgacaatcaaagtattttacgacctttggg 22635861  T
Q  303 ttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttccc 386  Q
    ||||||||||||||||| || |||||| |||||||  |||||||||||||||  |||||||||| ||| || | ||||||||||    
T  22635862 ttgtcaaaaactttcttcgctagagtggtttttccttgtcctcccattccaaagatggagacaattgtccggtctgctcttccc 22635945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 22431231 - 22431578
Alignment:
Q  17 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  || |||||||||||||||||||||    
T  22431231 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcataccaaaaatttgactcccatacatcatcaaacact 22431330  T
Q  117 acaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgagga-ggacctttcccttgttgc 215  Q
    ||||| |||||||||||||||||||||||||||| || ||||| |||||| |||| |||||||||| ||       |||||  ||| |    |||| |||    
T  22431331 acaacgtacctttttccttgcaagtagtttctcagtttatcaagtaataagtttcgatccatttgagga------ggaggatcgacttcaaacttg-tgc 22431423  T
Q  216 agtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttggttgtcaaaaactt 315  Q
    |  || | || || |||||||||| ||| ||||||| ||||||| |||||||||| | |||| ||||| ||||||| |||| | | ||||||||||||||    
T  22431424 aacattttctgcaacaatttttctatatcatatggttgagacactgtgatccataaacgacaatcaaagtgtttaaggaccctgttgttgtcaaaaactt 22431523  T
Q  316 tcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtg 371  Q
    ||||||  |||||| |||||||||||||||||||||| ||||||||||| ||||||    
T  22431524 tcttggttagagtggtttttcccagtcctcccattcc-acaatggagaccactgtg 22431578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 22458547 - 22458916
Alignment:
Q  17 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacact 116  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||  ||||||| |||||||||  ||  ||||||||||||||| |||    
T  22458547 gtttcttgttgtgattaatatcttacaaccctttttattatcaatcatagcaaatttgatatcatcccaaaaatgtaagctccatacatcatcaaaaact 22458646  T
Q  117 acaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggaggacctttcccttgt---- 212  Q
    | ||||||||||||| | ||||||||||| |||||||||||||| ||| ||| || || ||||||||||| |||||| ||  ||  |   ||||||        
T  22458647 ataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagatttgctccttgttgtt 22458746  T
Q  213 -----------tgcagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttg 301  Q
               ||||| |||||| |||||||   |||| |||| |||| | |||||||  |||||||||||||||| ||||| |||||||||| ||| |     
T  22458747 cgtaaaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgtt 22458846  T
Q  302 gttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtg 371  Q
    || ||||||||| ||||| ||||||||  |||||||  |||||||| |||||||||||| ||||| ||||    
T  22458847 gtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccctttccaacaatggtgacaattgtg 22458916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 17 - 371
Target Start/End: Original strand, 22481528 - 22481897
Alignment:
Q  17 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacact 116  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||  ||||||| |||||||||  ||  ||||||||||||||| |||    
T  22481528 gtttcttgttgtgattaatatcttacaaccctttttattatcaatcatagcaaatttgatatcatcccaaaaatgtaagctccatacatcatcaaaaact 22481627  T
Q  117 acaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggaggacctttcccttgt---- 212  Q
    | ||||||||||||| | ||||||||||| |||||||||||||| ||| ||| || || ||||||||||| |||||| ||  ||  |   ||||||        
T  22481628 ataacataccttttttcctgcaagtagttcctcacttcatcaaccaatgactctcgattcatttgatgaatactttgggggagatttgctccttgttgtt 22481727  T
Q  213 -----------tgcagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttg 301  Q
               ||||| |||||| |||||||   |||| |||| |||| | |||||||  |||||||||||||||| ||||| |||||||||| ||| |     
T  22481728 cgtaaaacttgtgcagcatgtccctcagcaagccttctatattgtatgattgagacactctgatccatacatgacaatcaaagtgtttaacgatcttgtt 22481827  T
Q  302 gttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtg 371  Q
    || ||||||||| ||||| ||||||||  |||||||  |||||||| |||||||||||| ||||| ||||    
T  22481828 gtcgtcaaaaaccttctttgcaagagttgtttttccttgtcctccctttccaacaatggtgacaattgtg 22481897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 386
Target Start/End: Original strand, 22436696 - 22437076
Alignment:
Q  21 cttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaa 120  Q
    |||||||||||||||| |||| ||||||||  ||||||||||||||||||||||||||||||||||| ||   ||| ||||||||| |||||||| ||||    
T  22436696 cttgttgtgattaataccttagaaccatttaagttatcaatcatagcaaattcaatatcattccaaatatttaagttccatacatcgtcaaacacgacaa 22436795  T
Q  121 catacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgatgaagactttgaggaggacctttcccttgttg------ 214  Q
      |||||||||   ||||| |  ||| ||||||||||||  ||   || ||| | ||||| ||  | ||| ||||||||| |||||||||||||          
T  22436796 agtaccttttttgctgcaactgttttatcacttcatcaatcaacggctctccgttcatttcatatatactctgaggaggatctttcccttgttgtttgta 22436895  T
Q  215 ---------cagtatgtccttcagcaatttttctttattatatggtcgagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttggttg 305  Q
             ||  |||||| ||| ||||||||||||| | |||| | ||||||| ||||||||||||||||||||||| ||||| | ||| ||   |||     
T  22436896 aatctcgagcaaaatgtccctcaacaatttttctttactgtatgattgagacactgtgatccatacatgacagtcaaattgttttaagactttgatgttc 22436995  T
Q  306 tcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttccc 386  Q
    ||||||||||||||||| |||||  |||||||  | ||||||||||| ||||| ||||||||||  |||| | ||||||||    
T  22436996 tcaaaaactttcttggccagagtagtttttccttgccctcccattcctacaatagagacaactgcacgctctactcttccc 22437076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 285 - 389
Target Start/End: Original strand, 22632206 - 22632310
Alignment:
Q  285 tgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttc 384  Q
    |||||||||| |||| |||||||||||||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||||||||| | ||||||||    
T  22632206 tgtttaacgatctttcggttgtcaaaaactttcttggctagagtggttttccccagtcctcccattccaataatggagacaactgtgcgatctgctcttc 22632305  T
Q  385 cctct 389  Q
    |||||    
T  22632306 cctct 22632310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 30989363 - 30989504
Alignment:
Q  17 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacact 116  Q
    ||||||||||||||| ||||||||||  |||||||| |||||||| | ||||||||||||||||| |||||||||      ||| ||||||||||||||     
T  30989363 gtttcttgttgtgataaatatcttacttccatttttattatcaattacagcaaattcaatatcatcccaaaaatgtacactccaaacatcatcaaacaca 30989462  T
Q  117 acaacatacctttttccttgcaagtagtttctcacttcatca 158  Q
    || ||||||||||||    |||||||||||||||||||||||    
T  30989463 acgacatacctttttaaccgcaagtagtttctcacttcatca 30989504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 22615330 - 22615466
Alignment:
Q  21 cttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaa 120  Q
    |||||||| || ||||||||||  |||||||| |||||||| | |||| ||||||| |||||||||||||||  || |||||||||||||||||| ||||    
T  22615330 cttgttgttataaatatcttacttccatttttattatcaattacagcagattcaatctcattccaaaaatgcatgttccatacatcatcaaacacaacaa 22615429  T
Q  121 catacctttttccttgcaagtagtttctcacttcatc 157  Q
    | ||||| |||   |||||||||||||| || |||||    
T  22615430 cgtacctcttttgctgcaagtagtttcttacctcatc 22615466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 22115493 - 22115327
Alignment:
Q  17 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacact 116  Q
    |||||||||||| || ||||||||||  ||||||||  ||||||| | || |||||||||||||| |||||||||    | ||| ||||||||||||||     
T  22115493 gtttcttgttgttataaatatcttacttccatttttactatcaattacagaaaattcaatatcatcccaaaaatgtacattccaaacatcatcaaacacg 22115394  T
Q  117 acaacatacctttttccttgcaagtagtttctcacttcatcaactaataactttccatccatttgat 183  Q
    ||||| ||||| |||   |||||||| |||||||||||||||  ||||||   || |||||||||||    
T  22115393 acaacgtacctctttttctgcaagtattttctcacttcatcagttaataatcctcgatccatttgat 22115327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 21 - 155
Target Start/End: Complemental strand, 21930825 - 21930691
Alignment:
Q  21 cttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaa 120  Q
    |||||||| || ||||||||||  ||||||||  |||||||   ||||||||||||||||| |||||||||    | ||| |||||||||||||| ||||    
T  21930825 cttgttgttataaatatcttacttccatttttactatcaattgcagcaaattcaatatcatcccaaaaatgtacattccaaacatcatcaaacacgacaa 21930726  T
Q  121 catacctttttccttgcaagtagtttctcacttca 155  Q
    ||||||| |||   |||||| | ||||||||||||    
T  21930725 catacctctttttctgcaagcattttctcacttca 21930691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 543 - 590
Target Start/End: Original strand, 22437914 - 22437961
Alignment:
Q  543 taaataatttagctttgaatgggcaattggctatgcaatgtgaagtgt 590  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||    
T  22437914 taaataatttagttttgaatgggcaattggctatgcaatgtgaggtgt 22437961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 493 - 585
Target Start/End: Original strand, 22439904 - 22439998
Alignment:
Q  493 attcggaatagataagatacccagctcttcagatcattcatctaactagttaaataattta-----gctttgaatgggcaattggctatgcaatgtga 585  Q
    ||||||||||||||||| ||| |||||||  |||||||||||| |||||||||||||||||     | ||||||| | ||||||||||||||||||||    
T  22439904 attcggaatagataagacacc-agctctt--gatcattcatctcactagttaaataatttaaattagttttgaatcgccaattggctatgcaatgtga 22439998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 22359155 - 22359208
Alignment:
Q  385 cctctctgtcattgttaaatattttattgagtaccttgacagcataaaaatcaa 438  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||    
T  22359155 cctctctatcattgtcaaatattttattgagtaacttgacagcataaatatcaa 22359208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 385 - 438
Target Start/End: Original strand, 22369057 - 22369110
Alignment:
Q  385 cctctctgtcattgttaaatattttattgagtaccttgacagcataaaaatcaa 438  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||    
T  22369057 cctctctatcattgtcaaatattttattgagtaacttgacagcataaatatcaa 22369110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 157
Target Start/End: Original strand, 18967049 - 18967185
Alignment:
Q  21 cttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaa 120  Q
    |||||||| || ||||| ||||  || ||||| |||||||| | | ||||||||||||||| |||||||||  |   ||| |||||||||||||| ||||    
T  18967049 cttgttgttatcaatatgttacttccttttttattatcaattacaacaaattcaatatcatcccaaaaatgtaaactccaaacatcatcaaacacaacaa 18967148  T
Q  121 catacctttttccttgcaagtagtttctcacttcatc 157  Q
    ||||||| ||  |  | ||||||||||| ||||||||    
T  18967149 catacctcttatcccgtaagtagtttcttacttcatc 18967185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 22034925 - 22034851
Alignment:
Q  17 gtttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatg 91  Q
    |||||||||||| || ||||||||||  ||||||||  ||||||| | || |||||||||||||| |||||||||    
T  22034925 gtttcttgttgttataaatatcttacttccatttttactatcaattacagaaaattcaatatcatcccaaaaatg 22034851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 547 - 583
Target Start/End: Complemental strand, 22449392 - 22449356
Alignment:
Q  547 taatttagctttgaatgggcaattggctatgcaatgt 583  Q
    |||||||| ||||||||||||||||||||||||||||    
T  22449392 taatttagttttgaatgggcaattggctatgcaatgt 22449356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 352
Target Start/End: Complemental strand, 21945781 - 21945682
Alignment:
Q  253 gagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattcc 352  Q
    ||||||| |||||||||||| |||| ||||| |||  || ||| |  | | ||||||||||||||||||| |||||| |||||||  | |||||||||||    
T  21945781 gagacacagtgatccatacaagacaatcaaagtgtcaaatgacatccttgctgtcaaaaactttcttggctagagtggtttttccttgccctcccattcc 21945682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 385
Target Start/End: Original strand, 22615621 - 22615700
Alignment:
Q  306 tcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaacaatggagacaactgtgcgctgtgctcttcc 385  Q
    |||||||| ||||||||||||||| |||| ||| | ||||||||||| || |  |||||||| ||||||| | |||||||    
T  22615621 tcaaaaacattcttggcaagagtggttttaccctgccctcccattcccaccacagagacaacagtgcgctctactcttcc 22615700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 2818708 - 2818650
Alignment:
Q  294 accttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattcc 352  Q
    ||||||||| |||||||||||  ||||||||||||| ||||||| || || ||||||||    
T  2818708 accttttggctgtcaaaaactagcttggcaagagtggtttttcctagaccccccattcc 2818650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 253 - 387
Target Start/End: Complemental strand, 21937310 - 21937176
Alignment:
Q  253 gagacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattcc 352  Q
    ||||||| |||||||||||| |||| ||||| |||  |||||| |  | | |||||||| ||||||| || |||||| |||||||  | |||||||||||    
T  21937310 gagacactgtgatccatacacgacaatcaaagtgtccaacgacatccttgctgtcaaaagctttcttagctagagtggtttttccttgccctcccattcc 21937211  T
Q  353 aacaatggagacaactgtgcgctgtgctcttccct 387  Q
     || |  || ||||| ||||||| ||| |||||||    
T  21937210 taccacagaaacaacagtgcgctctgcccttccct 21937176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 355
Target Start/End: Complemental strand, 2797512 - 2797451
Alignment:
Q  294 accttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaac 355  Q
    ||||||||  |||| ||||||  ||||||||||||| ||||||| || ||||||||||||||    
T  2797512 accttttgactgtcgaaaactagcttggcaagagtggtttttcctagacctcccattccaac 2797451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 34989624 - 34989492
Alignment:
Q  18 tttcttgttgtgattaatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacacta 117  Q
    |||||||| || || |||||||||| ||||||||| |||||| ||| | || ||||||| |||| |||||||   | || |||||||||||||||||| |    
T  34989624 tttcttgtggtaataaatatcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaa 34989525  T
Q  118 caacatacctttttccttgcaagtagtttctca 150  Q
     ||||||||| |||   |||||||| |||||||    
T  34989524 aaacatacctctttttctgcaagtactttctca 34989492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 34975772 - 34975657
Alignment:
Q  35 tatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacctttttcct 134  Q
    |||||||| ||||||||| |||||| ||| | || ||||||| |||| |||||||   | || |||||||||||||||||| | ||||||||| |||       
T  34975772 tatcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaacatacctctttttc 34975673  T
Q  135 tgcaagtagtttctca 150  Q
    |||||||| |||||||    
T  34975672 tgcaagtactttctca 34975657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 34980551 - 34980437
Alignment:
Q  36 atcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacctttttcctt 135  Q
    ||||||| ||||||||| |||||| ||| | || ||||||| |||| |||||||   | || |||||||||||||||||| | ||||||||| |||   |    
T  34980551 atcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaacatacctctttttct 34980452  T
Q  136 gcaagtagtttctca 150  Q
    ||||||| |||||||    
T  34980451 gcaagtaatttctca 34980437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 255 - 355
Target Start/End: Complemental strand, 34980317 - 34980217
Alignment:
Q  255 gacaccgtgatccatacatgacagtcaaaatgtttaacgaccttttggttgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattccaa 354  Q
    ||||| |||||||||||| |||| ||||| |||   || |||| || | | ||||||||||| || |||||||| ||||||||  | |||||||||||||    
T  34980317 gacactgtgatccatacacgacattcaaagtgtcccacaacctctttgctatcaaaaacttttttagcaagagttatttttccttgccctcccattccaa 34980218  T
Q  355 c 355  Q
    |    
T  34980217 c 34980217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 29610706 - 29610771
Alignment:
Q  98 ccatacatcatcaaacactacaacatacctttttccttgcaagtagtttctcacttcatcaactaa 163  Q
    ||||||||| |||||||||||||  ||||||||  | |||||||| |||||||||||||| |||||    
T  29610706 ccatacatcgtcaaacactacaaggtaccttttctcctgcaagtaatttctcacttcatcgactaa 29610771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 40580320 - 40580264
Alignment:
Q  33 aatatcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaa 89  Q
    |||||||||| ||||||||| |||||| |||||||| |||||||||||  |||||||    
T  40580320 aatatcttactaccatttttattatcactcatagcatattcaatatcaccccaaaaa 40580264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1439 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1439
Description:

Target: scaffold1439; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 127
Target Start/End: Original strand, 1714 - 1805
Alignment:
Q  36 atcttacaaccatttttgttatcaatcatagcaaattcaatatcattccaaaaatgcgagtcccatacatcatcaaacactacaacatacct 127  Q
    ||||||| ||||||||| |||||| ||| | || ||||||| |||| |||||||   | || |||||||||||||||||| | |||||||||    
T  1714 atcttactaccatttttattatcactcacaacatattcaatctcatcccaaaaacttgtgttccatacatcatcaaacacaaaaacatacct 1805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 304 - 352
Target Start/End: Complemental strand, 27294654 - 27294606
Alignment:
Q  304 tgtcaaaaactttcttggcaagagtgatttttcccagtcctcccattcc 352  Q
    ||||||||||||||||| | |||||| |||||||  |||||||||||||    
T  27294654 tgtcaaaaactttcttgactagagtggtttttccttgtcctcccattcc 27294606  T

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