View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11786_low_3 (Length: 570)
Name: NF11786_low_3
Description: NF11786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11786_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Original strand, 2680779 - 2681324
Alignment:
| Q |
18 |
aagctattgccacaatcattctgacagtattgagtcttgccacaagtacttaaacttctgagtaatcaaacccatgctttttataaaacctctagcaact |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2680779 |
aagctattgccacaatcattctgacagtattgagtcttgccacaagtacttaaacttctgagtaatcaaacccatgctttttataaaacctctagcaact |
2680878 |
T |
|
| Q |
118 |
aatcttgtttgatgcttagatatctatccatttggtttcaatttcaatttgaaagtccattttacatctatagctttcttatttgtcggaaatttggtgg |
217 |
Q |
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|||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2680879 |
aatcttgtttgaagcttagatatctctccatttggtttcaatttcaacttgaaagtccattttacatctatagctttcttatttgtcggaaatttggtgg |
2680978 |
T |
|
| Q |
218 |
gttctcatgtattgtttttattcatattatcgtataattcttcaatcgtaatatttttccaaactttatcggacaatgcaatctcatagttaacatattg |
317 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
2680979 |
gttctcatgtattgtttttattcatat---cgtataattcttcaatcgtaacatttttccaaacttcatcggacaatgcaatctcatagttaacatgttg |
2681075 |
T |
|
| Q |
318 |
agaatcgattaataatgcaaaatgtacaaagtccccttcatcattcactttaattttaggtattacttcatgactagctagtcttgttgacacatacctc |
417 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2681076 |
agaatcgattaataatgcaaaatgtagaaattccccttcatcattcactttacttttaggtattacttcatgactagctagtcttgttgacacatacctt |
2681175 |
T |
|
| Q |
418 |
tgtcttggtgaatttatgaaaccttcattaactacaatgggttgttcttcatatgtgtttcatcatttttctcagcttgttgttcttcaaataccattaa |
517 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
2681176 |
tgtcttgatgaatttatgaaaccttcattaactacaatgggttgttcttcatatgtgtttcatcagttttctcagcttgttcttcttcaaataccattaa |
2681275 |
T |
|
| Q |
518 |
aatgacgggattttagaaggtttctttcttgtttcaatcctatgcttct |
566 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2681276 |
aatgatgggattttagaaggtttctttcttgtttcaatcctaagcttct |
2681324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 100 - 202
Target Start/End: Complemental strand, 9816508 - 9816406
Alignment:
| Q |
100 |
ataaaacctctagcaactaatcttgtttgatgcttagatatctatccatttggtttcaatttcaatttgaaagtccattttacatctatagctttcttat |
199 |
Q |
| |
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||||||||||| ||||||| |||| || |||||||||||| | ||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||| |
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| T |
9816508 |
ataaaacctctcgcaactatccttgctttatgcttagatatgtcaccatttggttttaatttcagcttgaaaatccatttcacatctatagctttcttat |
9816409 |
T |
|
| Q |
200 |
ttg |
202 |
Q |
| |
|
||| |
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|
| T |
9816408 |
ttg |
9816406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 100 - 234
Target Start/End: Original strand, 11753912 - 11754046
Alignment:
| Q |
100 |
ataaaacctctagcaactaatcttgtttgatgcttagatatctatccatttggtttcaatttcaatttgaaagtccattttacatctatagctttcttat |
199 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||||||| | ||||||||||||||| |||||||||||| |||||||||||||| ||||||||| |
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| T |
11753912 |
ataaaacctctagcaactaacctttctttatgcttagatatttctccatttggtttcaacttcaatttgaaaacaaattttacatctataactttcttat |
11754011 |
T |
|
| Q |
200 |
ttgtcggaaatttggtgggttctcatgtattgttt |
234 |
Q |
| |
|
||| ||||||||| || | || |||||||||||| |
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|
| T |
11754012 |
ttgctggaaatttgatgagctcgcatgtattgttt |
11754046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 401
Target Start/End: Original strand, 15566591 - 15566663
Alignment:
| Q |
329 |
ataatgcaaaatgtacaaagtccccttcatcattcactttaattttaggtattacttcatgactagctagtct |
401 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||| | | ||||| || ||||||||| ||||||||| |
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|
| T |
15566591 |
ataatgcaaaatgcacaaagtccccttcctcattcacttcattattaggaatgacttcatgatcagctagtct |
15566663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 390
Target Start/End: Original strand, 15491232 - 15491295
Alignment:
| Q |
327 |
taataatgcaaaatgtacaaagtccccttcatcattcactttaattttaggtattacttcatga |
390 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||| |||| | | ||||| |||||||||||| |
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|
| T |
15491232 |
taataatgcaaaatgtacgtagtccccttcattatttacttcattgttaggaattacttcatga |
15491295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 327 - 429
Target Start/End: Original strand, 15064065 - 15064167
Alignment:
| Q |
327 |
taataatgcaaaatgtacaaagtccccttcatcattcactttaattttaggtattacttcatgactagctagtcttgttgacacatacctctgtcttggt |
426 |
Q |
| |
|
||||||||||||||| ||||| |||||||| | ||| |||| | | | |||| | | |||||||| ||||| ||||||||| ||| |||| |||||| || |
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|
| T |
15064065 |
taataatgcaaaatgaacaaattccccttcttaattgacttcattatcaggtgtaatttcatgaccagctaatcttgttgagacaaacctttgtctttgt |
15064164 |
T |
|
| Q |
427 |
gaa |
429 |
Q |
| |
|
||| |
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|
| T |
15064165 |
gaa |
15064167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 31357773 - 31357720
Alignment:
| Q |
145 |
ccatttggtttcaatttcaatttgaaagtccattttacatctatagctttctta |
198 |
Q |
| |
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|||||||| |||||||||||||||||| |||| || |||||||| | ||||||| |
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|
| T |
31357773 |
ccatttggcttcaatttcaatttgaaaatccacttcacatctattggtttctta |
31357720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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