View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11786_low_5 (Length: 511)

Name: NF11786_low_5
Description: NF11786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11786_low_5
NF11786_low_5
[»] chr2 (8 HSPs)
chr2 (1-507)||(21435037-21435543)
chr2 (1-189)||(27073888-27074076)
chr2 (1-178)||(27153783-27153960)
chr2 (1-234)||(26990856-26991086)
chr2 (1-189)||(27029742-27029930)
chr2 (288-370)||(27153974-27154056)
chr2 (308-371)||(27031141-27031204)
chr2 (384-496)||(27154097-27154211)
[»] chr6 (1 HSPs)
chr6 (1-234)||(34693113-34693343)
[»] chr4 (1 HSPs)
chr4 (24-189)||(50171614-50171779)


Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 21435037 - 21435543
Alignment:
Q  1 tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21435037 tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat 21435136  T
Q  101 gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaactacattgtcagg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21435137 gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaactacattgtcagg 21435236  T
Q  201 aaaacacaatagttacttgtaattagttaaagaggattgttgcaagtaaaatcgctttgtctcgagtgtcattataataggtggctgagacgtattctga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21435237 aaaacacaatagttacttgtaattagttaaagaggattgttgcaagtaaaatcgctttgtctcgagtgtcattataataggtggctgagacgtattctga 21435336  T
Q  301 atgttttaatattggagttcttttgcaacggtggtggtgataatccataacaaccctgtttgtattttttgcacagtgtatatgtattttttgttgttct 400  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21435337 atgttttaatattggagttcttttgcaacagtggtggtgataatccataacaaccctgtttgtattttttgcacagtgtataggtattttttgttgttct 21435436  T
Q  401 ctaaagtttaggattatactagtatacgattaaaacaattactttttagattgttttttggtccactgttattatcgatacaaatgaagagtttaatgag 500  Q
    ||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21435437 ctaaagtttaggattatactagtatacgattaaattgattactttttagattgttttttggtccactgttattatcgatacacatgaagagtttaatgag 21435536  T
Q  501 tgaaaga 507  Q
    |||||||    
T  21435537 tgaaaga 21435543  T

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Target: chr2; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 27074076 - 27073888
Alignment:
Q  1 tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat 100  Q
    ||||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||||||||| |||||||| ||| || |||||| | ||||||      
T  27074076 tcaggaggatagcagagcggttaggagctacttgtttgaaaaaacatgaccccactgtgacacatgtagttgctactgattttgtaactaaagagtcccg 27073977  T
Q  101 gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaact 189  Q
     ||||| | ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27073976 ctgggccgtgaaagaaaagaagtttttggttaatcgtcgatggctagaggctgcaaatttctttttgcaaaagcagcctgaggagaact 27073888  T

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Target: chr2; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 27153783 - 27153960
Alignment:
Q  1 tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat 100  Q
    |||||| |||||||||||||||||||||||||  ||| ||||||||| | |||||||||||||||| ||||||||||| ||| |||||| ||||||| ||    
T  27153783 tcaggaagatagcagagcggttaggagctactcatttaacagaacttaggcccactgtgacacatgtagttgctaatgcgtttgtaactaaggagtctat 27153882  T
Q  101 gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcc 178  Q
    ||| |||| ||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  27153883 gtgagcagtgaacgaaaatatgtttttggttaatcgtcgatggatagaggcttcaaatttctttttgcaaaagtagcc 27153960  T

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Target: chr2; HSP #4
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 26990856 - 26991086
Alignment:
Q  1 tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat 100  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| | ||| ||  || || |||||| ||||||||      
T  26990856 tcaggaggatagcagagcggttaggagctacttgtttgaaaaaacttgaccccactgtgacacatgtaattggtacagattttgtaactaaggagtcccg 26990955  T
Q  101 gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaactacattgtcagg 200  Q
    |||||| | | |||| || ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||   |||||       
T  26990956 gtgggccgtgcaagagaagaagtttttggttagtcgtcgttggctagaggctgcaaatttctttttgcaaaagcagcctgaggagaactttcttgtc--- 26991052  T
Q  201 aaaacacaatagttacttgtaattagttaaagag 234  Q
    |||| ||| ||||| || ||||||||||||||||    
T  26991053 aaaatacactagtttctggtaattagttaaagag 26991086  T

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Target: chr2; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 27029742 - 27029930
Alignment:
Q  1 tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat 100  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||| || ||||||||||||||||| |||||||| ||| || |||||| | ||||||      
T  27029742 tcaggaggatagcagagaggttaggagctacttgtttgaaaaaacatgaccccactgtgacacatgtagttgctactgattttgtaactaaagagtcccg 27029841  T
Q  101 gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaact 189  Q
     ||||| |   ||||||| ||||||||||||||||||||||||||||||||| || |||||| ||| ||||||||||||||||| ||||    
T  27029842 ctgggccgttgaagaaaagaagtttttggttaatcgtcgatggctagaggctgcagatttctatttccaaaagcagcctgaggaaaact 27029930  T

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Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 288 - 370
Target Start/End: Original strand, 27153974 - 27154056
Alignment:
Q  288 agacgtattctgaatgttttaatattggagttcttttgcaacggtggtggtgataatccataacaaccctgtttgtatttttt 370  Q
    ||||||||||||||||||| |||||||| ||||||||||||| || | |||||||||||||||||| ||||| ||||| ||||    
T  27153974 agacgtattctgaatgtttgaatattggtgttcttttgcaacagttgcggtgataatccataacaaacctgtgtgtatatttt 27154056  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 308 - 371
Target Start/End: Original strand, 27031141 - 27031204
Alignment:
Q  308 aatattggagttcttttgcaacggtggtggtgataatccataacaaccctgtttgtattttttg 371  Q
    ||||||||||||||| | || | | ||||||||||||||||||||| |||||||||||||||||    
T  27031141 aatattggagttcttgtacatcagaggtggtgataatccataacaatcctgtttgtattttttg 27031204  T

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Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 384 - 496
Target Start/End: Original strand, 27154097 - 27154211
Alignment:
Q  384 gtattttttgttgttctctaaagttt-----aggattatactagtatacgattaaaacaattactttttagattgttttttggtccactgttattatcga 478  Q
    ||||||||||||||||||||||||||     ||||||||||||||||||||||||   | | | |||||||||| ||||||| ||||  ||||||||| |    
T  27154097 gtattttttgttgttctctaaagtttaggtcaggattatactagtatacgattaa---attgagtttttagattcttttttgatccaaagttattatcaa 27154193  T
Q  479 tacaaatgaagagtttaa 496  Q
    || |||||| ||| ||||    
T  27154194 tagaaatgatgaggttaa 27154211  T

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Target: chr6 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 34693113 - 34693343
Alignment:
Q  1 tcaggaggatagcagagcggttaggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatgagttggtaactgaggagtccat 100  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| | ||| ||  || || |||||| ||||||||      
T  34693113 tcaggaggatagcagagcggttaggagctacttgtttgaaaaaacttgaccccactgtgacacatgtaattggtacagattttgtaactaaggagtcccg 34693212  T
Q  101 gtgggcagagaaagaaaataagtttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaactacattgtcagg 200  Q
    |||||| | | |||| || ||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||   |||||       
T  34693213 gtgggccgtgcaagagaagaagtttttggttagtcgtcgttggctagaggctgcaaatttctttttgcaaaagcagcctgaggagaactttcttgtc--- 34693309  T
Q  201 aaaacacaatagttacttgtaattagttaaagag 234  Q
    |||| ||| ||||| || ||||||||||||||||    
T  34693310 aaaatacactagtttctggtaattagttaaagag 34693343  T

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Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 189
Target Start/End: Complemental strand, 50171779 - 50171614
Alignment:
Q  24 ggagctacttgtttgacagaacttggccccactgtgacacatgcagttgctaatga-gttggtaactgaggagtccatgtgggcagagaaagaaaataag 122  Q
    |||||||| |||||||  ||||||| |||||||||||||||||  ||||||| ||| | ||| ||||||| ||||   ||||||||  |||||||| |||    
T  50171779 ggagctacctgtttgatggaacttgaccccactgtgacacatgtggttgctactgatgctgg-aactgagaagtctcggtgggcagttaaagaaaagaag 50171681  T
Q  123 tttttggttaatcgtcgatggctagaggcttcaaatttctttttgcaaaagcagcctgaggagaact 189  Q
    ||||||||| |||  |||||| |||||||| |||| | ||||| ||||||||| || ||||||||||    
T  50171680 tttttggttcatccccgatggatagaggctgcaaactacttttggcaaaagcaaccagaggagaact 50171614  T

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