View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11786_low_6 (Length: 509)
Name: NF11786_low_6
Description: NF11786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11786_low_6 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 23 - 509
Target Start/End: Original strand, 13634543 - 13635008
Alignment:
| Q |
23 |
ggtttttgcacaacatgatattgattgaatctacgtttgacattgattctcaacaatataaagaattgtgatggcaattgttagagataaaaccctgatt |
122 |
Q |
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| T |
13634543 |
ggtttttgcacaacatgatattgattgaatctacgttcgactttgattctcaacaatataaagaattgtgatggcaattgttagtgataaaaccctgatt |
13634642 |
T |
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| Q |
123 |
ataattaggattttaaatagagttttgtgagtgcgatctagaccacaacacaacagttttttatgttatcgaaaccactaagaatcttcgattgatgtca |
222 |
Q |
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| T |
13634643 |
ataattaggattttaaatagagttttgtgagtgcgatctagaccacaacacaacagttttttatgttatcgaaaccactaagaatcttcgattgatgtcg |
13634742 |
T |
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| Q |
223 |
catttgactgtgattcttcacaatatcaaggatcacagcgacctcaatcttaaccacgtctaccttttaaaaccctaatgataatgatgccatgataaag |
322 |
Q |
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| T |
13634743 |
catttgactgtgattcttcacaatatcaaggatcacagtgacc---------------------ttttaaaaccctaatgataatgatgccatgataaag |
13634821 |
T |
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| Q |
323 |
ataaagataaaaataaggagcactacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcatggagcttggactgtcagtgat |
422 |
Q |
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| T |
13634822 |
ataaagataaaaataaggagcactacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcatggagcttggactgtcagtgat |
13634921 |
T |
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| Q |
423 |
attgataaaggcactgaggtacttctcactttcatcaaattcaccagcaagaattttctcttcaaagtacttcaaatcaaagaatac |
509 |
Q |
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| T |
13634922 |
attgataaaggcactgaggtacttctcactttcatcaaattcaccagcaagaattttctcttcaaagtacttcaaatcaaagaatac |
13635008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 33 - 509
Target Start/End: Complemental strand, 27532565 - 27532071
Alignment:
| Q |
33 |
caacatgatattgattgaatctacgtttgacattgattctcaacaatataaagaattgtgatggcaattgttagagataaaaccctgattataattagga |
132 |
Q |
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| T |
27532565 |
caacatgacattgattgaatctacatttgattacgattcctaacaatatcaagaattgtgatggcaatcgttagtgataaaactccgattataat-agga |
27532467 |
T |
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| Q |
133 |
ttttaaatagagttttgtgagtgcgatctagaccacaacacaacagttttttatgttatcgaaaccactaagaatcttcgattgatgtcacatttgactg |
232 |
Q |
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| T |
27532466 |
ttttaaatagagttttgtgagtgtgatcaaaaccacgacacaacaattttttatgttgtcgaaaccactatgaatcttcgattgaggtcgcatttgattg |
27532367 |
T |
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| Q |
233 |
tgattcttcacaatatcaaggatcacagcgacctcaatcttaaccacgtctaccttttaaaaccctaatgataatgatgc-------------------- |
312 |
Q |
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| T |
27532366 |
tgattcttcacaatatcaaggatcacggtgacatcaatcttaacgaagtctactttttaaaaccctaatgataatgatgccatgcagatgataatgatgt |
27532267 |
T |
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| Q |
313 |
catgataaagataaagataaaaataaggagcactacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcatggagcttggac |
412 |
Q |
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| T |
27532266 |
catgataaagataaagataaaaa-aaggagcactacctgtccaaggcttccaaatacttctgcttcctaatctgaaaaaacattttcatggagctttgac |
27532168 |
T |
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| Q |
413 |
tgtcagtgatattgataaaggcactgaggtacttctcactttcatcaaattcaccagcaagaattttctcttcaaagtacttcaaatcaaagaatac |
509 |
Q |
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| T |
27532167 |
tgtcagtgatattggtaaaggcactgaggtacttctcactttcatcaaattctccatcaaggattttctcttgaaagtacttcaaatcgatgaatac |
27532071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 499
Target Start/End: Original strand, 13689792 - 13689946
Alignment:
| Q |
345 |
ctacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcatggagcttggactgtcagtgatattgataaaggcactgaggtac |
444 |
Q |
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| T |
13689792 |
ctacctctccaagacttcataatatttttgcttcctaatctcaaagagcattttcatggagccttcattttcattagtatttgtaaaaccattgaggtac |
13689891 |
T |
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| Q |
445 |
ttctcactttcatcaaattcaccagcaagaattttctcttcaaagtacttcaaat |
499 |
Q |
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| T |
13689892 |
ttctcacactcatcccaatctccagcaaggattttctcttcaaaatacttcaaat |
13689946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 344 - 395
Target Start/End: Original strand, 13644290 - 13644341
Alignment:
| Q |
344 |
actacctgtccaaggcttcaagatacttttgcttcctaatctcaaagaacat |
395 |
Q |
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| T |
13644290 |
actacctgtccaaggcttcaaaatacttctgcttcctaatctcaaagaacat |
13644341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Original strand, 47414833 - 47414882
Alignment:
| Q |
352 |
tccaaggcttcaagatacttttgcttcctaatctcaaagaacattttcat |
401 |
Q |
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| T |
47414833 |
tccaacgcttcaagatacttctgcttcctaatctcgaagaaaatcttcat |
47414882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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