View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11786_low_7 (Length: 276)
Name: NF11786_low_7
Description: NF11786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11786_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 263
Target Start/End: Complemental strand, 9071081 - 9070845
Alignment:
| Q |
19 |
agactttaatgatgacatgtccacacttgggaggaaaattcaaatttgaaaacttgaaatcagcattaaatgatggtaccaaagcttgcataacacacct |
118 |
Q |
| |
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|||||||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9071081 |
agactttaatgatgacatatccacacttgagagggaaattcaaatttgaaaacttgaaatcagcattaaatgatggtaccaaagcttgcataagacacct |
9070982 |
T |
|
| Q |
119 |
aggagatatgtttgggagggaaaacacaaaagcaattagggttaagcacttgcttgacctaattgacttttataataagtatgataagtatgatatgata |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
9070981 |
aggagatatgtttgggagggaaaacacaaaagcaattagggttaagcatttgcttgacctaattggcttttataataagtat---------gatatgata |
9070891 |
T |
|
| Q |
219 |
ggttgtagga-cctgaattcaatcaaacttgccctgtgatgttatt |
263 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
9070890 |
ggttgtaggaccctgaattcaatcaaacttgccctgtgatgttatt |
9070845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 19 - 200
Target Start/End: Original strand, 18140857 - 18141050
Alignment:
| Q |
19 |
agactttaatgatgacatgtccacacttgggaggaaaattcaaatttgaaaacttgaaatcagcat------------taaatgatggtaccaaagcttg |
106 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
18140857 |
agactttaatgatgacatgtccacacttgagaggaaaattcaaatttgaaaatttgaaatcagcataaaatgcaacattaaatgatggtaccaaagcttg |
18140956 |
T |
|
| Q |
107 |
cataacacacctaggagatatgtttgggagggaaaacacaaaagcaattagggttaagcacttgcttgacctaattgacttttataataagtat |
200 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
18140957 |
cataacacacctaggagatgtgtttgggagggaaagcacaaaagcaattagggttaagcatttgcttgacctaattggcttttataataagtat |
18141050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 9071194 - 9071079
Alignment:
| Q |
9 |
agcacagagtagactttaatgatgacatgtccacacttgggaggaaaattcaaatttgaaaacttgaaatcagcattaaatgatggtaccaaagcttgca |
108 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9071194 |
agcacaaagtagactttaatgatgacatgtccacacttggaagggaaattcaaatttgaaaacttgaaatcagcattaaatgatgataccaaagcttgca |
9071095 |
T |
|
| Q |
109 |
taacacacctaggaga |
124 |
Q |
| |
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||||||||| |||||| |
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|
| T |
9071094 |
taacacaccaaggaga |
9071079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 116
Target Start/End: Original strand, 18140687 - 18140784
Alignment:
| Q |
19 |
agactttaatgatgacatgtccacacttgggaggaaaattcaaatttgaaaacttgaaatcagcattaaatgatggtaccaaagcttgcataacacac |
116 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18140687 |
agactttaatgatgacatgtccacacttgggagggaaattcaaatttgaaaacttgaaatcaacattaaatgatggtaccaaagcttgcataacacac |
18140784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 18140790 - 18140821
Alignment:
| Q |
19 |
agactttaatgatgacatgtccacacttggga |
50 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
18140790 |
agactttaatgatgacatgtccacacttggga |
18140821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 18140821 - 18140859
Alignment:
| Q |
86 |
aaatgatggtaccaaagcttgcataacacacctaggaga |
124 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| |
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|
| T |
18140821 |
aaatgacggtaccaaagcttgcataacacaccaaggaga |
18140859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 43732978 - 43733178
Alignment:
| Q |
16 |
agtagactttaatgatgacatgtccacacttgggaggaaaattcaaatttgaaaacttgaaatcagcatt------------aaatgatggtaccaaagc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
43732978 |
agtagactttaatgatgacatgtccacacttgggtgggaaattcaaatttgaaaacttgaaatcatcattaaatgcaacattaaatgatggtaccaaagc |
43733077 |
T |
|
| Q |
104 |
ttgcataacacacctaggagatatgtttgggagggaaaacacaaaagcaattagggttaagcacttgcttgacctaattgacttttataataagtatgat |
203 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
43733078 |
ttgcataacacacctaggagatgtgtttgggagggaaaacacaaaagcaagtagggttaagcatttgcttga-ctaattgacttttataataagtatgat |
43733176 |
T |
|
| Q |
204 |
aa |
205 |
Q |
| |
|
|| |
|
|
| T |
43733177 |
aa |
43733178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 43732880 - 43732976
Alignment:
| Q |
21 |
actttaatgatgacatgtccacacttgggaggaaaattcaaatttgaaaacttgaaatcagcattaaatgatggtaccaaagcttgcataacacacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |
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| T |
43732880 |
actttaatgatgacatgtccacacttgggagggaaattcaaatttgaaaacttgaaatcaacagtaaatgatggtaccaaagcttgcataatacacc |
43732976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 11483888 - 11483944
Alignment:
| Q |
149 |
agcaattagggttaagcacttgcttgacctaattgacttttataataagtatgataa |
205 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||| |||||| | |||||||||||| |
|
|
| T |
11483888 |
agcaattagggctaagcaattgcttgacctaattagcttttagagtaagtatgataa |
11483944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 22310096 - 22310168
Alignment:
| Q |
130 |
ttgggagggaaaacacaaaagcaattagggttaagcacttgcttgacctaattgacttttataataagtatgat |
203 |
Q |
| |
|
|||||||||||| || ||||| |||||||||||||| || ||||||||||| |||||| |||||||||||| |
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|
| T |
22310096 |
ttgggagggaaat-accaaagctattagggttaagcatttacttgacctaataagcttttagaataagtatgat |
22310168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 5336435 - 5336241
Alignment:
| Q |
19 |
agactttaatgatgacatgtccacacttgggaggaaaattcaaatttgaaaa--cttgaaat------------cagcattaaatgatggtaccaaagct |
104 |
Q |
| |
|
|||||||||||||| |||| |||||| ||||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |
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|
| T |
5336435 |
agactttaatgatggcatgcccacacctgggagggaaattcaaatttgaaaaaacttgaaattagcattaaatgcagcattaaatgatggtatcaaagct |
5336336 |
T |
|
| Q |
105 |
tgcataacacacctaggagatatgtttgggagggaaaacacaaaagcaattagggttaagcacttgcttgacctaattgacttttataataagta |
199 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5336335 |
tgcataacacacctatgagatgtgtttgggagggaaaatacaaaagcaattagggttaagcatttgcttgacctaattgacttttataataagta |
5336241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 124
Target Start/End: Complemental strand, 5336548 - 5336433
Alignment:
| Q |
9 |
agcacagagtagactttaatgatgacatgtccacacttgggaggaaaattcaaatttgaaaacttgaaatcagcattaaatgatggtaccaaagcttgca |
108 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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|
| T |
5336548 |
agcacaaaggagactttaatgatgacatgtccacacttgggagggaaattcaaatttgaaaacttgaaatcagcattaaattatgataccaaagcttgca |
5336449 |
T |
|
| Q |
109 |
taacacacctaggaga |
124 |
Q |
| |
|
|| |||||| |||||| |
|
|
| T |
5336448 |
tagcacaccaaggaga |
5336433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 28336548 - 28336619
Alignment:
| Q |
133 |
ggagggaaaacacaaaagcaattagggttaagcacttgcttgacctaattgacttttataataagtatgata |
204 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||| |
|
|
| T |
28336548 |
ggagggaaatcacaaaagcaattagggttaagcaattgcttgacctaattagcttttagagtaagtatgata |
28336619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 47503689 - 47503629
Alignment:
| Q |
149 |
agcaattagggttaagcacttgcttgacctaattgacttttataataagtatgataagtat |
209 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||| |||||| | ||||||||||| |||| |
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|
| T |
47503689 |
agcaattagggttaagcaattgcttgacttaattagcttttagagtaagtatgatatgtat |
47503629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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