View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_high_11 (Length: 601)
Name: NF11787_high_11
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 138 - 582
Target Start/End: Original strand, 1229122 - 1229566
Alignment:
| Q |
138 |
gttttatcgttctgatctcattcacttaattgtttgatttgatgtaatcttttgttatgttgtttttgttggtgatggcaatggaaatcgattggatatg |
237 |
Q |
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| T |
1229122 |
gttttatcgttctgatctaattcacttaattgtttgatttgatgtaatattttgttatgttgtttttgttggtgatggcaatggaaatcgattggatatg |
1229221 |
T |
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| Q |
238 |
cagtatatttaggtatgattaatttgtgttttatatatgctgtgtttttcttttgttttgagaattgttgatttggcatttagacaccaaaccaaatggt |
337 |
Q |
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| T |
1229222 |
cagtatatttaggtatgattaatttgtgttttatatatgctgtgtttttcttttgttttaagaattgttgatttggcatttagaaaccaaaccaaatggt |
1229321 |
T |
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| Q |
338 |
tggattcaaatgacaaatgaac-tttagcgaaggtcaaactctgaagaatccaaattcgagtcctaactgaaataattattggtcaaattttatttattt |
436 |
Q |
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| T |
1229322 |
tggattcaaatgacaaatgaacttttagcgaaggtc-gagtccgaagaatccaaattcgagtcctaactaaaataatcgttggtcaaattttatttgttt |
1229420 |
T |
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| Q |
437 |
tgtatcgtagtcgaactcaggattaccaaaatccattttgaaaatttaaagtggatagtggctagatggaagtatttaatgactgcaaagttgggtttgt |
536 |
Q |
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| T |
1229421 |
tgtatcgtagtcgaactcaggattaccaaaatcaattttgaaaatttaaagtggatagtggctagatggaagtatttaatgactgcaaagttgggtttgt |
1229520 |
T |
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| Q |
537 |
tttgttaggagcatatgatgatgaagaagctgcagcacgtgcctat |
582 |
Q |
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| T |
1229521 |
tttgttaggagcatatgatgatgaagaagctgcagcacgtgcctat |
1229566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 1229004 - 1229069
Alignment:
| Q |
20 |
atgaagctcatttgtgggataagaattgctggaatgaatcacaaagcaagaaaggaagacaaggtg |
85 |
Q |
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| T |
1229004 |
atgaagctcatttgtgggataagaattgctggaatgaatcacaaagcaagaaaggaagacaaggtg |
1229069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 54267058 - 54267122
Alignment:
| Q |
20 |
atgaagctcatttgtgggataagaattgctggaatgaatcacaaagcaagaaaggaagacaaggt |
84 |
Q |
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| T |
54267058 |
atgaagctcatttgtgggacaagaattgttggaatgagtctcagaacaagaaagggagacaaggt |
54267122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 25049791 - 25049855
Alignment:
| Q |
20 |
atgaagctcatttgtgggataagaattgctggaatgaatcacaaagcaagaaaggaagacaaggt |
84 |
Q |
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| T |
25049791 |
atgaagctcatttgtgggacaagaattgttggaatgaatcgcaaaacaaaaaaggacgacaaggt |
25049855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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