View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11787_high_16 (Length: 546)
Name: NF11787_high_16
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 176 - 498
Target Start/End: Original strand, 26766691 - 26767009
Alignment:
| Q |
176 |
gaaacacataactagaacacgagggaatttggaattttggctcattatattactgcataaggtgacaatgatgagaattattgcatcattatattatcaa |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26766691 |
gaaacacataactagaacacgagggaatttggaattttggctcattatattact-cataaggtgacaatgatgagaattattgcatcattattttatcag |
26766789 |
T |
|
| Q |
276 |
aatttttgctcacgaattttttgtttgttttcaaattcagcatgaaacaatgatgacgcattatatttgctagaactattttataccgacaataaactgt |
375 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26766790 |
aatttttgctcacgatttttttttttgttttcaaattcagcatgaaa---tgatgacgcattatattttctagaactattttataccgacaataaactgt |
26766886 |
T |
|
| Q |
376 |
caccttggagtgtgtaatgacttgaaagttgaaacaaacaaccccacgagcttattgataaatctacaaaataaaataaatacaaattatatttataagg |
475 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26766887 |
caccttggagtgtgtaatgacttgaaagttgaaacaaacaaccccacgagcttattgataaatctacaaaataaaataaataaaaattatatttataagg |
26766986 |
T |
|
| Q |
476 |
atggatgaaaatagtgaaattga |
498 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
26766987 |
atggatgaaaatagtgaaattga |
26767009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 26766516 - 26766653
Alignment:
| Q |
1 |
tgatgtctgtatattatgcttattttatattgtggaaaaccatgaattgttgccagtattggacaagaattgctcttcattgcaaagtgttatatgattc |
100 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26766516 |
tgatgtctgtatattctgtttattttatattgtggaaaaccatgaattgttgccagtattggacaagaattgctcttcattgcaaagtgttatatgattc |
26766615 |
T |
|
| Q |
101 |
tattttgaaagcgggtcttcttctcgcaatgaaactgc |
138 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26766616 |
tattttgaaagcgggtcttcttctcgcaatgaaactgc |
26766653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University