View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_high_18 (Length: 543)
Name: NF11787_high_18
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 250 - 525
Target Start/End: Complemental strand, 22327790 - 22327512
Alignment:
| Q |
250 |
ctcccatctttcttgcatattcgatggaagagaaagataatgatgttggtggattagggtgtggtagtggtggaagaaaagaagaccgnnnnnnnggtgg |
349 |
Q |
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| T |
22327790 |
ctcccatctttcttgcatattcgatggaagagaaagataatgatgttggtggattagggtgtggtagtggtggaagaaaagaagaccgtttttttggtgg |
22327691 |
T |
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| Q |
350 |
ttcaagtgactctggttgtggttctaaatctagatattgttggggtggttgaaagtactggtgatgaaaatgaaaggttgggtcttggtgttggtgttgg |
449 |
Q |
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| T |
22327690 |
ttcaagtgactctggttgtggttctaaatctagatattgttggggtggttgaaagtactggtgatgaaaatgaaaggttgggtcttggtgttggtgttgg |
22327591 |
T |
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| Q |
450 |
tgttggtcatgatagtgag---gatgcaggggtttttcagatgagggagatgaattttgttcatcattttcttcttctt |
525 |
Q |
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| T |
22327590 |
tgttggtcatgatagtgaggatgatgcaggggtttttcagatgagggagatgaattttgttcatcattttcttcttctt |
22327512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 22328039 - 22327861
Alignment:
| Q |
1 |
gcacgtcgtagaattgaatcgcagtgtgggctgagagtcgtacacggcggtcacggggacctttcgcggtgcaaactttactgtgacggtctttccgtcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328039 |
gcacgtcgtagaattgaatcgcagtgtgggctgagagtcgtacacggcggtcacggggacctttcgcggtgcaaactttactgtgacggtctttccgtcc |
22327940 |
T |
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| Q |
101 |
tgttgaacggacaatgtgacctccttgtacctccacgatttctcctcctcctccgctgctgctgattctcttcgacgag |
179 |
Q |
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| T |
22327939 |
tgttgaacggacaatgtgacctccttgtacctccacgatttctcctcctcctccgctgctgctgattctcttcgacgag |
22327861 |
T |
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