View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_high_19 (Length: 524)
Name: NF11787_high_19
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 21 - 367
Target Start/End: Original strand, 11483385 - 11483733
Alignment:
| Q |
21 |
ttaacgacccacatattgatttgatggccttgaaagaatcatctccctcactcagtttttctagcatcacataccctatactatagagaggggcattctt |
120 |
Q |
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| T |
11483385 |
ttaacgaccaacatattgatttgatggccttgaaagaatcatcttcctcactcagtttttctagcatcgcataccctatactatagagaggagcattctt |
11483484 |
T |
|
| Q |
121 |
gcatgat--cgtcatcacctatttgtcgagttcggctaaaatgataattatttttaagtgtaaataacaccatatcaaatatatcagcctttagttttga |
218 |
Q |
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| T |
11483485 |
gcatgattgcgtcatcacctatttatcgagttcggctaaaatgataattatttttaagtgtaaataacaccatatccaatatatcagcctttagttttga |
11483584 |
T |
|
| Q |
219 |
agttctactaaaagatattctttgatgcttttcaaataaacatttctccctctgttctttgtgacaagggcctctaaacaagttgctcccaagtcttttc |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11483585 |
agttatactaaaagatattctttgatgcttttcaaataaacatttccccctctgtgctttgtgacaagggcctctgaacaagttgctcccaagtcttttc |
11483684 |
T |
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| Q |
319 |
ttctagtaatttcttcattgaatatgacatcctttacttgagatgaagt |
367 |
Q |
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| T |
11483685 |
ttctagtaatttcttcattgaatatgacatcctttacttgagatgaagt |
11483733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 441
Target Start/End: Complemental strand, 12931567 - 12931528
Alignment:
| Q |
402 |
accaccaaaatctcccaactttatggcaaagaactcaaaa |
441 |
Q |
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| T |
12931567 |
accaccaaagtctcccaactttttggcaaagaactcaaaa |
12931528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 441
Target Start/End: Complemental strand, 14174837 - 14174798
Alignment:
| Q |
402 |
accaccaaaatctcccaactttatggcaaagaactcaaaa |
441 |
Q |
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| T |
14174837 |
accaccaaagtctcccaactttctggcaaagaactcaaaa |
14174798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 441
Target Start/End: Original strand, 28611040 - 28611079
Alignment:
| Q |
402 |
accaccaaaatctcccaactttatggcaaagaactcaaaa |
441 |
Q |
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| T |
28611040 |
accaccaaagtctcccaactttctggcaaagaactcaaaa |
28611079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 17163093 - 17163056
Alignment:
| Q |
137 |
ctatttgtcgagttcggctaaaatgataattattttta |
174 |
Q |
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| T |
17163093 |
ctatttgccgagttcggctaacatgataattattttta |
17163056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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