View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_high_42 (Length: 404)
Name: NF11787_high_42
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_42 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 401
Target Start/End: Complemental strand, 19476907 - 19476523
Alignment:
| Q |
17 |
aattttcatattcaccataaaacaatgtatccaaaccttgatcatttgaccattttgtccaacccttttgatcaataaaatcatcaatataagactcaat |
116 |
Q |
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| T |
19476907 |
aattttcatattcaccataaaacaatgtatccaaaccttgatcatttgaccatttggtccaacccttttgatcaataaaatcatcaatataagactcaat |
19476808 |
T |
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| Q |
117 |
taaaaccgttctagaaaaaacccgccacggcctcccaaggtaactcttgaccttactagagtttgaataaagctcatccgtagcaataatcgaacaattt |
216 |
Q |
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| T |
19476807 |
taaaaccgttctagaaaaaaccctccacggcctcccaaggtaactcttgaccttactagagtttgaataaagctcatccgtagcgataatcgaacaattt |
19476708 |
T |
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| Q |
217 |
tggattgaaattcccgtgtcttcgtcgggattatcccgtgattgcgcggttataactgtaaattgaccaggtaatggcattcttgatacgatgtcgcatt |
316 |
Q |
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| T |
19476707 |
tggattgaaattcccgtgtcttcgtcagggttatcccgtgattgcgcggttataactgtaaattgaccaggtaatggcattcttgatacgatgtcgcatt |
19476608 |
T |
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| Q |
317 |
cttgtaatactactgcggagttaccaaatatgaaatctattgtcccgtaaatgtcgcattcgcgatagaattgtctaaatgagtg |
401 |
Q |
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| T |
19476607 |
cttgtaatactactgcggcgttaccaaatatgaaatctattgtcccgtaaatgtcgcattcgcggtagaattgtctgaatgagtg |
19476523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 64 - 404
Target Start/End: Complemental strand, 51548427 - 51548087
Alignment:
| Q |
64 |
gaccattttgtccaacccttttgatcaataaaatcatcaatataagactcaattaaaaccgttctagaaaaaacccgccacggcctcccaaggtaactct |
163 |
Q |
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| T |
51548427 |
gaccatttcgtccatcccattggatcaatgaacacatcaatgtaagactcaatgaaaacagtcctagaataaaccctccaaggccttccaaggtaactct |
51548328 |
T |
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| Q |
164 |
tgaccttactagagtttgaataaagctcatccgtagcaataatcgaacaattttggattgaaattcccgtgtcttcgtcgggattatcccgtgattgcgc |
263 |
Q |
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| T |
51548327 |
tgatgttgttatagttgttatacaaatcagtagtagctaaaattgaacagttttggattgagatgccagtgtcttcatcaggtgaatctcttgactgtgc |
51548228 |
T |
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| Q |
264 |
ggttataactgtaaattgaccaggtaatggcattcttgatacgatgtcgcattcttgtaatactactgcggagttaccaaatatgaaatctattgtcccg |
363 |
Q |
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| T |
51548227 |
agtgattacagtgtattggttaggtaatggcattcttgatataatgttacatgcttgtaaaactactgctgcatttccaaatatgtaatctatggtccca |
51548128 |
T |
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| Q |
364 |
taaatgtcgcattcgcgatagaattgtctaaatgagtgaac |
404 |
Q |
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| T |
51548127 |
aaaatgtcacactctctatagaattgtctaaatgagtgaac |
51548087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 44488627 - 44488676
Alignment:
| Q |
328 |
actgcggagttaccaaatatgaaatctattgtcccgtaaatgtcgcattc |
377 |
Q |
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| T |
44488627 |
actgcggcgtttccaaatataaaatctattgttccataaatgtcgcattc |
44488676 |
T |
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