View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11787_high_50 (Length: 377)
Name: NF11787_high_50
Description: NF11787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11787_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 46054105 - 46053750
Alignment:
| Q |
1 |
cagtagaaaatctcggtcagaaaccgcatcgatactattcaatatgacaaaatgtaatcaattatccaagaaaaaa-cgtgaacattaacatatttaata |
99 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| |||||||||| | |
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| T |
46054105 |
cagtaggaaatctcggtcagaaaccgcatcgatactattcaatatgacaacatgtaatcaattatccaagaaaaaaacgcgaacattcacatatttaaca |
46054006 |
T |
|
| Q |
100 |
ttaatcccatgccaggtccaactacatggatcaatttcaaaccagtaaaaagtaagatacctattcctcattggagctgtaaatcccaatgcatcagatg |
199 |
Q |
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| T |
46054005 |
ttaatcccatgccaggtccaactacatggatcaatttcaaaccagtaaaaagcaagatacctattcctcattggagctgtaaatcccaatgcatcagatg |
46053906 |
T |
|
| Q |
200 |
tcatgaatcgatcaataggaagccctgtaccagccaatgcacaagctcctaaaggacaaaaattcatcctagctctacaatcgatcaaacgaccagcatc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46053905 |
tcatgaatcgatcaataggaagccctgtaccagccaatgcacaagcccctaaaggacaaaaattcatcctagctctacaatcgatcaaacgaccagcatc |
46053806 |
T |
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| Q |
300 |
acgctcaatctgcaagaggggtcaataaaactaaatgagctcaaactgaaacaggg |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46053805 |
acgctcaatctgcaagaggggtcaataaaactaaatgagctcaaactgaaacaggg |
46053750 |
T |
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